RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 ZCCHC7Q8N3Z6 543 aaKnown RBP20■□□□□ 0.79
PTPRF-207ENST00000436724 SLC47A1Q96FL8 570 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 CENPNQ96H22 339 aaPredicted RBP20■□□□□ 0.79
PTPRF-207ENST00000436724 OSBPL11Q9BXB4 747 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 UGT2B28Q9BY64 529 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 IL21RQ9HBE5 538 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 FAM60AQ9NP50 221 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 OAZ3Q9UMX2 235 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 CORO2BQ9UQ03 480 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 MRPS2Q9Y399 296 aaKnown RBP20■□□□□ 0.79
PTPRF-207ENST00000436724 TP53BP1Q12888 1972 aaPredicted RBP20■□□□□ 0.79
PTPRF-207ENST00000436724 DNAJB6O75190 326 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 ERAL1O75616 437 aaKnown RBP20■□□□□ 0.79
PTPRF-207ENST00000436724 DRD2P14416 443 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 IL1RNP18510 177 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 AQP1P29972 269 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 FRKP42685 505 aaPredicted RBP20■□□□□ 0.79
PTPRF-207ENST00000436724 CDK9P50750 372 aaKnown RBP20■□□□□ 0.79
PTPRF-207ENST00000436724 AFF3P51826 1226 aaKnown RBP20■□□□□ 0.79
PTPRF-207ENST00000436724 ZXDAP98168 799 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 ARMC6Q6NXE6 501 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 RBM44Q6ZP01 1051 aaKnown RBP20■□□□□ 0.79
PTPRF-207ENST00000436724 CARM1Q86X55 608 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 SHISA5Q8N114 240 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 NECAB3Q96P71 396 aaPredicted RBP20■□□□□ 0.79
PTPRF-207ENST00000436724 POMT2Q9UKY4 750 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 FAF1Q9UNN5 650 aaPredicted RBP20■□□□□ 0.79
PTPRF-207ENST00000436724 KLK4Q9Y5K2 254 aa20■□□□□ 0.79
PTPRF-207ENST00000436724 RNF103-CHMP3A0A140T963 221 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 A0A1B0GVT2 93 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 ZNF682O95780 498 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 FCGR1AP12314 374 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 C21orf59P57076 290 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 RPS26P62854 115 aaKnown RBP19.99■□□□□ 0.79
PTPRF-207ENST00000436724 MAP7Q14244 749 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 ATP6AP1Q15904 470 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 DEFB110Q30KQ9 67 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 PPP4R4Q6NUP7 873 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 ZBTB49Q6ZSB9 765 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 OR52N2Q8NGI0 321 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 OR5P2Q8WZ92 322 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 NMD3Q96D46 503 aaKnown RBP19.99■□□□□ 0.79
PTPRF-207ENST00000436724 FAIM2Q9BWQ8 316 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 GRIP2Q9C0E4 1043 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 STARD5Q9NSY2 213 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 SIRT3Q9NTG7 399 aaPredicted RBP19.99■□□□□ 0.79
PTPRF-207ENST00000436724 TMEM74BQ9NUR3 256 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 ANKMY1Q9P2S6 941 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 CABIN1Q9Y6J0 2220 aa19.99■□□□□ 0.79
PTPRF-207ENST00000436724 LMO7DNF2Z398 122 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 CTSBP07858 339 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 C8orf89P0DMQ9 161 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 KDELR2P33947 212 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 TSFMP43897 325 aaKnown RBP19.98■□□□□ 0.79
PTPRF-207ENST00000436724 ARFIP1P53367 373 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 BIRC2Q13490 618 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 ERICH5Q6P6B1 374 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 CBR4Q8N4T8 237 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 ZBED6CLQ96FA7 236 aaPredicted RBP19.98■□□□□ 0.79
PTPRF-207ENST00000436724 RBM38Q9H0Z9 239 aaKnown RBP19.98■□□□□ 0.79
PTPRF-207ENST00000436724 GLIPR2Q9H4G4 154 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 SLC35C2Q9NQQ7 365 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 TAS2R7Q9NYW3 318 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 PADI4Q9UM07 663 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 PROM1O43490 865 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 B4GALT2O60909 372 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 TNFRSF21O75509 655 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 PIAS2O75928 621 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 LDLRP01130 860 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 ALPPL2P10696 532 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 UQCRC2P22695 453 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 CRYBA2P53672 197 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 DUSP2Q05923 314 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 WDR45BQ5MNZ6 344 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 PRSS41Q7RTY9 318 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 RERGQ96A58 199 aaPredicted RBP19.98■□□□□ 0.79
PTPRF-207ENST00000436724 VPS50Q96JG6 964 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 SLC38A3Q99624 504 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 EPS8L2Q9H6S3 715 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 VCX3AQ9NNX9 186 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 C1GALT1Q9NS00 363 aa19.98■□□□□ 0.79
PTPRF-207ENST00000436724 ZNF860A6NHJ4 632 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 PLOD2O00469 737 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 CDH3P22223 829 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 OLR1P78380 273 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 TGM3Q08188 693 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 BNIP3Q12983 259 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 NHSL2Q5HYW2 709 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 RNF44Q7L0R7 432 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 CAMKVQ8NCB2 501 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 ZFP28Q8NHY6 868 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 CNRIP1Q96F85 164 aaPredicted RBP19.97■□□□□ 0.79
PTPRF-207ENST00000436724 ZNF764Q96H86 408 aaPredicted RBP19.97■□□□□ 0.79
PTPRF-207ENST00000436724 NLNQ9BYT8 704 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 NTN4Q9HB63 628 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 EHD3Q9NZN3 535 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 ZDBF2Q9HCK1 2354 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 CLOCKO15516 846 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 SMIM10L1P0DMW3 83 aa19.97■□□□□ 0.79
PTPRF-207ENST00000436724 PPM1FP49593 454 aaPredicted RBP19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms