RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 CDCA4Q9BXL8 241 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 SP140LQ9H930 580 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 CLN6Q9NWW5 311 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 TMEM98Q9Y2Y6 226 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 CHD9Q3L8U1 2897 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 LTBP2Q14767 1821 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 PLXND1Q9Y4D7 1925 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 NOTCH4Q99466 2003 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 SH3BP5O60239 455 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 KIAA0513O60268 411 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 PAPLNO95428 1278 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 DLGAP3O95886 979 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 ALOX12P18054 663 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 MAPK12P53778 367 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 UGT2B15P54855 530 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 HSPB3Q12988 150 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 SEC23BQ15437 767 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 DEPDC1Q5TB30 811 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 PNCKQ6P2M8 343 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 ZNF367Q7RTV3 350 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 FAM129CQ86XR2 697 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 RBM45Q8IUH3 476 aaKnown RBP11.24□□□□□ -0.61
CD44-209ENST00000433892 ARRDC3Q96B67 414 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 TMEM19Q96HH6 336 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 TMEM165Q9HC07 324 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 CPNE5Q9HCH3 593 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 CCDC59Q9P031 241 aaKnown RBP11.24□□□□□ -0.61
CD44-209ENST00000433892 SPATA7Q9P0W8 599 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 ANKMY1Q9P2S6 941 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 KCND3Q9UK17 655 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 ICKQ9UPZ9 632 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 KLK4Q9Y5K2 254 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 A3GALT2U3KPV4 340 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 XIRP2A4UGR9 3374 aa11.24□□□□□ -0.61
CD44-209ENST00000433892 LRRK1Q38SD2 2015 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 SH3D21A4FU49 640 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 ENTPD6O75354 484 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 PRNPP04156 253 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 CYP17A1P05093 508 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 SPNP16150 400 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 DDCP20711 480 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 TPTEP56180 551 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 ZNF45Q02386 682 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 PRKCDQ05655 676 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 CDC20Q12834 499 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 PLAG1Q6DJT9 500 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 GRASPQ7Z6J2 395 aaPredicted RBP11.23□□□□□ -0.61
CD44-209ENST00000433892 ATCAYQ86WG3 371 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 CACTIN-AS1Q8N1I8 211 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 KRT78Q8N1N4 520 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 ANKRD53Q8N9V6 530 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 FAM46DQ8NEK8 389 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 GPR32P1Q8NGA4 272 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 OR2L2Q8NH16 312 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 VANGL1Q8TAA9 524 aaPredicted RBP11.23□□□□□ -0.61
CD44-209ENST00000433892 SETD7Q8WTS6 366 aaKnown RBP11.23□□□□□ -0.61
CD44-209ENST00000433892 APOBEC4Q8WW27 367 aaKnown RBP11.23□□□□□ -0.61
CD44-209ENST00000433892 NEURL3Q96EH8 262 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 ABHD8Q96I13 439 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 DPEP2Q9H4A9 486 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 CNOT2Q9NZN8 540 aaKnown RBP11.23□□□□□ -0.61
CD44-209ENST00000433892 TAC3Q9UHF0 121 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 ENOPH1Q9UHY7 261 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 MTCL1Q9Y4B5 1905 aaKnown RBP11.23□□□□□ -0.61
CD44-209ENST00000433892 C17orf113A0A1B0GUU1 675 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 FEZF1A0PJY2 475 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 PRRT4C9JH25 899 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 ARHGAP33O14559 1287 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 MPZL2O60487 215 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 B4GALT2O60909 372 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 KCNK2O95069 426 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 FGF19O95750 216 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 ADH5P11766 374 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 SELENBP1Q13228 472 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 SSX1Q16384 188 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 KHDRBS2Q5VWX1 349 aaKnown RBP11.23□□□□□ -0.61
CD44-209ENST00000433892 SAXO2Q658L1 398 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 TCTN3Q6NUS6 607 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 C11orf96Q7Z7L8 435 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 MRPL43Q8N983 215 aaKnown RBP11.23□□□□□ -0.61
CD44-209ENST00000433892 C9orf43Q8TAL5 461 aaPredicted RBP11.23□□□□□ -0.61
CD44-209ENST00000433892 RAD51AP1Q96B01 352 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 TM4SF18Q96CE8 201 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 LINC00615Q96LM1 132 aaPredicted RBP11.23□□□□□ -0.61
CD44-209ENST00000433892 KCNS3Q9BQ31 491 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 WFDC6Q9BQY6 131 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 ZNF717Q9BY31 904 aaPredicted RBP11.23□□□□□ -0.61
CD44-209ENST00000433892 OR52A5Q9H2C5 316 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 CUEDC1Q9NWM3 386 aaPredicted RBP11.23□□□□□ -0.61
CD44-209ENST00000433892 AHSPQ9NZD4 102 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 DNAJC27Q9NZQ0 273 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 TMCC3Q9ULS5 477 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 UGT2A1Q9Y4X1 527 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 SNX11Q9Y5W9 270 aa11.23□□□□□ -0.61
CD44-209ENST00000433892 ARRDC5A6NEK1 342 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 TLR4O00206 839 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 CCRL2O00421 344 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 PDPK1O15530 556 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 OR10H3O60404 316 aa11.22□□□□□ -0.61
CD44-209ENST00000433892 MFN2O95140 757 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms