RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 FAM46CQ5VWP2 391 aa10.18□□□□□ -0.78
CUX1-205ENST00000425244 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.18□□□□□ -0.784e-7■■■□□ 15
CUX1-205ENST00000425244 LSM14AQ8ND56 463 aaKnown RBP10.18□□□□□ -0.78
CUX1-205ENST00000425244 OR14C36Q8NHC7 312 aa10.18□□□□□ -0.78
CUX1-205ENST00000425244 CXorf40AQ8TE69 158 aa10.18□□□□□ -0.78
CUX1-205ENST00000425244 GTPBP3Q969Y2 492 aaKnown RBP10.18□□□□□ -0.78
CUX1-205ENST00000425244 NACC2Q96BF6 587 aa10.18□□□□□ -0.78
CUX1-205ENST00000425244 PITX2Q99697 317 aa10.18□□□□□ -0.78
CUX1-205ENST00000425244 NIPSNAP1Q9BPW8 284 aa10.18□□□□□ -0.78
CUX1-205ENST00000425244 NECTIN3Q9NQS3 549 aa10.18□□□□□ -0.78
CUX1-205ENST00000425244 TRNAU1APQ9NX07 287 aaKnown RBP10.18□□□□□ -0.78
CUX1-205ENST00000425244 CFAP20Q9Y6A4 193 aaKnown RBP10.18□□□□□ -0.78
CUX1-205ENST00000425244 LRRK1Q38SD2 2015 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 A0A1W2PRB8 838 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 FUOMA2VDF0 154 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 IGLON5A6NGN9 336 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 SH3BP5O60239 455 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 MAPK9P45984 424 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 ALDH9A1P49189 494 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 PNLIPRP1P54315 467 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 MVKQ03426 396 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 ELP6Q0PNE2 266 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 SMAD2Q15796 467 aaKnown RBP10.17□□□□□ -0.78
CUX1-205ENST00000425244 INAQ16352 499 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 TRIM40Q6P9F5 258 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 NXPE4Q6UWF7 544 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 KIAA1324Q6UXG2 1013 aaKnown RBP10.17□□□□□ -0.78
CUX1-205ENST00000425244 Q6ZS52 159 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 NRSN1Q8IZ57 195 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 OR52N2Q8NGI0 321 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 IPCEF1Q8WWN9 437 aaPredicted RBP10.17□□□□□ -0.78
CUX1-205ENST00000425244 HRASLS5Q96KN8 279 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 COQ10AQ96MF6 247 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 ZNF300Q96RE9 604 aaPredicted RBP10.17□□□□□ -0.78
CUX1-205ENST00000425244 GABARAPL3Q9BY60 117 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 PLXNA2O75051 1894 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 KNL1Q8NG31 2342 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 OR2A25A4D2G3 310 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 EFCAB9A8MZ26 197 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 RTCAO00442 366 aaKnown RBP10.17□□□□□ -0.78
CUX1-205ENST00000425244 GPR37L1O60883 481 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 PAK4O96013 591 aaPredicted RBP10.17□□□□□ -0.78
CUX1-205ENST00000425244 DNTTP04053 509 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 GSTT2P0CG29 244 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 GSTT2BP0CG30 244 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 MAPK11Q15759 364 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 PIP5KL1Q5T9C9 394 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 FAAH2Q6GMR7 532 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 FAM83HQ6ZRV2 1179 aaPredicted RBP10.17□□□□□ -0.78
CUX1-205ENST00000425244 PAGE2Q7Z2X7 111 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 NLRP8Q86W28 1048 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 ZNF547Q8IVP9 402 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 CCDC103Q8IW40 242 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 KLHDC8AQ8IYD2 350 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 OXR1Q8N573 874 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 OR5AR1Q8NGP9 310 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 CXorf40BQ96DE9 158 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 LGALS12Q96DT0 336 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 ZHX1-C8orf76Q96EF9 292 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 SGPP1Q9BX95 441 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 WDR12Q9GZL7 423 aaKnown RBP10.17□□□□□ -0.78
CUX1-205ENST00000425244 IRF2BPLQ9H1B7 796 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 RSPH9Q9H1X1 276 aaPredicted RBP10.17□□□□□ -0.78
CUX1-205ENST00000425244 IMPAD1Q9NX62 359 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 GPR83Q9NYM4 423 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 TAS2R9Q9NYW1 312 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 FAM32AQ9Y421 112 aaKnown RBP10.17□□□□□ -0.78
CUX1-205ENST00000425244 PMF1-BGLAPU3KQ54 211 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 SDK1Q7Z5N4 2213 aa10.17□□□□□ -0.78
CUX1-205ENST00000425244 PRAMEF33A0A0G2JMD5 474 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 A0A1W2PQF6 199 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 PRAMEF25A6NGN4 478 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 FOXE1O00358 373 aaPredicted RBP10.16□□□□□ -0.78
CUX1-205ENST00000425244 STK25O00506 426 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 PRAMEF10O60809 474 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 BMP4P12644 408 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 GGT2P36268 569 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 LIPAP38571 399 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 TDGQ13569 410 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 PRAMEF14Q5SWL7 426 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 AGBL4Q5VU57 503 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 PRAMEF13Q5VWM6 474 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 SLC6A16Q9GZN6 736 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 ROGDIQ9GZN7 287 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 EHD1Q9H4M9 534 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 ZNF556Q9HAH1 456 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 AKIP1Q9NQ31 210 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 ITM2CQ9NQX7 267 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 PCYT1BQ9Y5K3 369 aaPredicted RBP10.16□□□□□ -0.78
CUX1-205ENST00000425244 LOC100506127A0A0U1RQW1 187 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 PCDH17O14917 1159 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 LILRB5O75023 590 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 PCCBP05166 539 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 HSMCR30P0CW71 290 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 DRD1P21728 446 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 ACVR2AP27037 513 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 POU1F1P28069 291 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 BCAP31P51572 246 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 TAS2R38P59533 333 aa10.16□□□□□ -0.78
CUX1-205ENST00000425244 PCDH1Q08174 1060 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms