RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 UBE3DQ7Z6J8 389 aa11.34□□□□□ -0.59
PTPRN-204ENST00000423636 SVOPLQ8N434 492 aa11.34□□□□□ -0.59
PTPRN-204ENST00000423636 FAM160A2Q8N612 972 aaPredicted RBP11.34□□□□□ -0.59
PTPRN-204ENST00000423636 TBC1D15Q8TC07 691 aa11.34□□□□□ -0.59
PTPRN-204ENST00000423636 WFIKKN2Q8TEU8 576 aa11.34□□□□□ -0.59
PTPRN-204ENST00000423636 GIPC3Q8TF64 312 aa11.34□□□□□ -0.59
PTPRN-204ENST00000423636 PHF10Q8WUB8 498 aaKnown RBP11.34□□□□□ -0.59
PTPRN-204ENST00000423636 FAR1Q8WVX9 515 aa11.34□□□□□ -0.59
PTPRN-204ENST00000423636 RORBQ92753 470 aa11.34□□□□□ -0.59
PTPRN-204ENST00000423636 NLNQ9BYT8 704 aa11.34□□□□□ -0.59
PTPRN-204ENST00000423636 TRIT1Q9H3H1 467 aaKnown RBP11.34□□□□□ -0.59
PTPRN-204ENST00000423636 TCEAL2Q9H3H9 227 aaPredicted RBP11.34□□□□□ -0.59
PTPRN-204ENST00000423636 ZCCHC3Q9NUD5 404 aaKnown RBP11.34□□□□□ -0.59
PTPRN-204ENST00000423636 THAP10Q9P2Z0 257 aaPredicted RBP11.34□□□□□ -0.59
PTPRN-204ENST00000423636 PRAMEF27A3QJZ7 478 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 K7EQS6 105 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 RNGTTO60942 597 aaKnown RBP11.33□□□□□ -0.6
PTPRN-204ENST00000423636 CELA2BP08218 269 aaPredicted RBP11.33□□□□□ -0.6
PTPRN-204ENST00000423636 CTSKP43235 329 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 DSTNP60981 165 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 PPP1CAP62136 330 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 CD300CQ08708 224 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 SLAMF1Q13291 335 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 ADPRMQ3LIE5 342 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 DEPDC1Q5TB30 811 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 METRNLQ641Q3 311 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 B3GLCTQ6Y288 498 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 TSPYL5Q86VY4 417 aaPredicted RBP11.33□□□□□ -0.6
PTPRN-204ENST00000423636 NRSN1Q8IZ57 195 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 METTL4Q8N3J2 472 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 GOLM1Q8NBJ4 401 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 COQ8BQ96D53 544 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 LRIG1Q96JA1 1093 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 ZNF717Q9BY31 904 aaPredicted RBP11.33□□□□□ -0.6
PTPRN-204ENST00000423636 SLC17A9Q9BYT1 436 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 MCOLN1Q9GZU1 580 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 ZBTB20Q9HC78 741 aaPredicted RBP11.33□□□□□ -0.6
PTPRN-204ENST00000423636 DNAJC27Q9NZQ0 273 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 KLHL42Q9P2K6 505 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 PCDHGA6Q9Y5G7 932 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 ZNF106Q9H2Y7 1883 aaKnown RBP11.33□□□□□ -0.6
PTPRN-204ENST00000423636 GSAPA4D1B5 854 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 EIF3FO00303 357 aaPredicted RBP11.33□□□□□ -0.6
PTPRN-204ENST00000423636 OR10H3O60404 316 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 CTSBP07858 339 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 IGFALSP35858 605 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 ACTR1BP42025 376 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 ACTR1AP61163 376 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 KCNC3Q14003 757 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 SEC23BQ15437 767 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 SKIV2LQ15477 1246 aaKnown RBP11.33□□□□□ -0.6
PTPRN-204ENST00000423636 DEFB110Q30KQ9 67 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 IQCCQ4KMZ1 466 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 ANXA8L1Q5VT79 327 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 SHFQ7M4L6 423 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 ZNF438Q7Z4V0 828 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 KRT78Q8N1N4 520 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 HMGB4Q8WW32 186 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 APH1BQ8WW43 257 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 CAMK1GQ96NX5 476 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 AIF1LQ9BQI0 150 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 SERHL2Q9H4I8 314 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 MVB12BQ9H7P6 319 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 MARCH7Q9H992 704 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 BRF2Q9HAW0 419 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 NDRG2Q9UN36 371 aaKnown RBP11.33□□□□□ -0.6
PTPRN-204ENST00000423636 PLXNA2O75051 1894 aa11.33□□□□□ -0.6
PTPRN-204ENST00000423636 NPIPA5A0A0B4J1W7 369 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 LINC00854A0A1B0GVQ3 168 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 NPIPA7E9PJI5 369 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 QSOX1O00391 747 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 FFAR1O14842 300 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 TNFRSF21O75509 655 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 GADD45GO95257 159 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 CH25HO95992 272 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 CEACAM5P06731 702 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 NPIPA8P0DM63 369 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 DBTP11182 482 aaKnown RBP11.32□□□□□ -0.6
PTPRN-204ENST00000423636 HOXB2P14652 356 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 PTX3P26022 381 aaPredicted RBP11.32□□□□□ -0.6
PTPRN-204ENST00000423636 BSGP35613 385 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 OPRL1P41146 370 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 CCT3P49368 545 aaKnown RBP11.32□□□□□ -0.6
PTPRN-204ENST00000423636 CCR8P51685 355 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 CSNK1G2P78368 415 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 CLEC12AQ5QGZ9 265 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 KIAA1614Q5VZ46 1190 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 PRSS41Q7RTY9 318 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 DSG4Q86SJ6 1040 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 SLCO6A1Q86UG4 719 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 GALNT13Q8IUC8 556 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 TMCO5AQ8N6Q1 288 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 BBS4Q96RK4 519 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 C2orf42Q9NWW7 574 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 ZNF282Q9UDV7 671 aaPredicted RBP11.32□□□□□ -0.6
PTPRN-204ENST00000423636 PDPK1O15530 556 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 ZSCAN9O15535 394 aaPredicted RBP11.32□□□□□ -0.6
PTPRN-204ENST00000423636 CDC123O75794 336 aaPredicted RBP11.32□□□□□ -0.6
PTPRN-204ENST00000423636 NR2F1P10589 423 aa11.32□□□□□ -0.6
PTPRN-204ENST00000423636 IL1RNP18510 177 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms