RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 OR6C74A6NCV1 312 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 NFAT5O94916 1531 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 SPATA31C1P0DKV0 1188 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 MLLT1Q03111 559 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 TDGQ13569 410 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 SH3PXD2AQ5TCZ1 1133 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 C22orf39Q6P5X5 142 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 OR5AK3PQ8NH89 298 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 MALSU1Q96EH3 234 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 SYT17Q9BSW7 474 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 SMOC2Q9H3U7 446 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 RXFP3Q9NSD7 469 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 HIF3AQ9Y2N7 669 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 CMAHPQ9Y471 501 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 AP1M2Q9Y6Q5 423 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 LRRN3E7EW58 273 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 GPR25O00155 361 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 FLRT2O43155 660 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 SOD2P04179 222 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 ABOP16442 354 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 EFNA1P20827 205 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 MVKQ03426 396 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 PPM1JQ5JR12 505 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 SLC18B1Q6NT16 456 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 UBE2Q1Q7Z7E8 422 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 OR51D1Q8NGF3 324 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 OR6N2Q8NGY6 317 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 LMF2Q9BU23 707 aaKnown RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 ARHGAP39Q9C0H5 1083 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 LRRN3Q9H3W5 708 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 MEAF6Q9HAF1 191 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 CTPS2Q9NRF8 586 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 UBE2J1Q9Y385 318 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 PCDHGA8Q9Y5G5 932 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 KLRG2A4D1S0 409 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 PRKCAP17252 672 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 MAGP20916 626 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 NUDT1P36639 197 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 LASP1Q14847 261 aaKnown RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 MFSD5Q6N075 450 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF773Q6PK81 442 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 LCTLQ6UWM7 567 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 SLC51AQ86UW1 340 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 C1orf52Q8N6N3 182 aaKnown RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF781Q8N8C0 355 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 OR2T33Q8NG76 320 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 EMID1Q96A84 441 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 WDR6Q9NNW5 1121 aaKnown RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 DNAJB11Q9UBS4 358 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 APOBEC3BQ9UH17 382 aaKnown RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 PEAK1Q9H792 1746 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 OR6C6A6NF89 314 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 C2CD4BA6NLJ0 364 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 BCAS1O75363 584 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 ACY1Q03154 408 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF33AQ06730 810 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 TMEM115Q12893 351 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 NSDHLQ15738 373 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 ODF4Q2M2E3 257 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 LRRC25Q8N386 305 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 OR14K1Q8NGZ2 314 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 HBEGFQ99075 208 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 FUZQ9BT04 418 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 YTHDF1Q9BYJ9 559 aaKnown RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 DPEP3Q9H4B8 488 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 ZBTB26Q9HCK0 441 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 B3GNT2Q9NY97 397 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 WNT6Q9Y6F9 365 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 LOC102725191A0A1B0GVB3 256 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 A0A1W2PPH5 198 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 LEFTY2O00292 366 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 MAN2A2P49641 1150 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 PSMA6P60900 246 aaKnown RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 RPS13P62277 151 aaKnown RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 RPS24P62847 133 aaKnown RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF92Q03936 586 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 SERINC3Q13530 473 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 KCTD19Q17RG1 926 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-204ENST00000423058 KCNK18Q7Z418 384 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 COMTD1Q86VU5 262 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 NIPA2Q8N8Q9 360 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 BBS10Q8TAM1 723 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 TSGA13Q96PP4 275 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 C19orf12Q9NSK7 152 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 REV1Q9UBZ9 1251 aa6.6□□□□□ -1.35
SCN1A-204ENST00000423058 ADGRB1O14514 1584 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 BTBD17A6NE02 478 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 A8MXE2 369 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 XRCC1P18887 633 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-204ENST00000423058 C5AR1P21730 350 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 CD72P21854 359 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 IL32P24001 234 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 PTGS2P35354 604 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ELAVL3Q14576 367 aaKnown RBP6.59□□□□□ -1.35
SCN1A-204ENST00000423058 GRM7Q14831 915 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ARL6IP1Q15041 203 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 VWA5B1Q5TIE3 1220 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms