RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CD27P26842 260 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 NUP214P35658 2090 aaPredicted RBP14.11□□□□□ -0.15
USP4-203ENST00000415188 GSTM5P46439 218 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 CSNK2BP67870 215 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 KCNJ10P78508 379 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 VLDLRP98155 873 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 IL5RAQ01344 420 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 CATSPEREQ5SY80 951 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 LAIR2Q6ISS4 152 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 ANKRD26P1Q6NSI1 321 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 TRIM40Q6P9F5 258 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 VTCN1Q7Z7D3 282 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 TRIM74Q86UV6 250 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 ZNF547Q8IVP9 402 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 C7orf34Q96L11 122 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 RIBC2Q9H4K1 309 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 TM7SF3Q9NS93 570 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 KRT84Q9NSB2 600 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 THUMPD1Q9NXG2 353 aaKnown RBP14.11□□□□□ -0.15
USP4-203ENST00000415188 SCN3BQ9NY72 215 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 ETAA1Q9NY74 926 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 PCOLCE2Q9UKZ9 415 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 NDRG4Q9ULP0 352 aaKnown RBP14.11□□□□□ -0.15
USP4-203ENST00000415188 SCML1Q9UN30 329 aa14.11□□□□□ -0.15
USP4-203ENST00000415188 EXO1Q9UQ84 846 aaKnown RBP14.11□□□□□ -0.15
USP4-203ENST00000415188 IGF2RP11717 2491 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 GPR89AB7ZAQ6 455 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 hCG_2039718K7EN88 272 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 K7ESM1 405 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 PLK4O00444 970 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 CBFA2T3O75081 653 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 TNFRSF21O75509 655 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 HTR1AP08908 422 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 GPR89BP0CG08 455 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 ITGA2P17301 1181 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 TEAD1P28347 426 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 METAP1P53582 386 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 EMP3P54852 163 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 MVKQ03426 396 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 NFATC3Q12968 1075 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 RAPSNQ13702 412 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 ZNF630Q2M218 657 aaPredicted RBP14.1□□□□□ -0.15
USP4-203ENST00000415188 IQCCQ4KMZ1 466 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 ZNF385BQ569K4 471 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 KIAA1614Q5VZ46 1190 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 ANKRD34AQ69YU3 496 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 ADNP2Q6IQ32 1131 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 CHST15Q7LFX5 561 aaPredicted RBP14.1□□□□□ -0.15
USP4-203ENST00000415188 C11orf96Q7Z7L8 435 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 TSPYL5Q86VY4 417 aaPredicted RBP14.1□□□□□ -0.15
USP4-203ENST00000415188 SVOPQ8N4V2 548 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 SLC6A18Q96N87 628 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 DPH2Q9BQC3 489 aaPredicted RBP14.1□□□□□ -0.15
USP4-203ENST00000415188 GABARAPL3Q9BY60 117 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 LHPPQ9H008 270 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 RHBGQ9H310 441 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 NT5DC2Q9H857 520 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 PSME2Q9UL46 239 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 GMPPBQ9Y5P6 360 aa14.1□□□□□ -0.15
USP4-203ENST00000415188 A0A1B0GVG6 124 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 A0A1W2PPW3 197 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 MITFO75030 526 aaPredicted RBP14.09□□□□□ -0.15
USP4-203ENST00000415188 FTH1P19P0C7X4 201 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 ZNF883P0CG24 379 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 CLK3P49761 638 aaKnown RBP14.09□□□□□ -0.15
USP4-203ENST00000415188 MVDP53602 400 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 SELENOWP63302 87 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 C2orf80Q0P641 193 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 PPP1R8Q12972 351 aaKnown RBP14.09□□□□□ -0.15
USP4-203ENST00000415188 SF1Q15637 639 aaKnown RBP14.09□□□□□ -0.15
USP4-203ENST00000415188 IFI44LQ53G44 452 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.09□□□□□ -0.15
USP4-203ENST00000415188 CRTC3Q6UUV7 619 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 TMIGD1Q6UXZ0 262 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 LRRTM4Q86VH4 590 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 AMZ2Q86W34 360 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 ANKRD13BQ86YJ7 626 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 TTC29Q8NA56 475 aaPredicted RBP14.09□□□□□ -0.15
USP4-203ENST00000415188 IPCEF1Q8WWN9 437 aaPredicted RBP14.09□□□□□ -0.15
USP4-203ENST00000415188 ZNF764Q96H86 408 aaPredicted RBP14.09□□□□□ -0.15
USP4-203ENST00000415188 QRFPRQ96P65 431 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 SLC35A5Q9BS91 424 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 DCUN1D5Q9BTE7 237 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 DUSP21Q9H596 190 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 THSD1Q9NS62 852 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 TAS2R9Q9NYW1 312 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 ZMIZ1Q9ULJ6 1067 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 ICKQ9UPZ9 632 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 SH2B3Q9UQQ2 575 aa14.09□□□□□ -0.15
USP4-203ENST00000415188 LRRC72A6NJI9 287 aa14.08□□□□□ -0.16
USP4-203ENST00000415188 ZNF99A8MXY4 864 aaPredicted RBP14.08□□□□□ -0.16
USP4-203ENST00000415188 C6orf47O95873 294 aa14.08□□□□□ -0.16
USP4-203ENST00000415188 BCL10O95999 233 aa14.08□□□□□ -0.16
USP4-203ENST00000415188 ADH1BP00325 375 aa14.08□□□□□ -0.16
USP4-203ENST00000415188 AGXTP21549 392 aa14.08□□□□□ -0.16
USP4-203ENST00000415188 MATN1P21941 496 aa14.08□□□□□ -0.16
USP4-203ENST00000415188 PCMT1P22061 227 aa14.08□□□□□ -0.16
USP4-203ENST00000415188 PLA2G16P53816 162 aa14.08□□□□□ -0.16
USP4-203ENST00000415188 ADPRHP54922 357 aa14.08□□□□□ -0.16
USP4-203ENST00000415188 RAB15P59190 212 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms