RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SCRN2Q96FV2 425 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 JSRP1Q96MG2 331 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 SPOCK3Q9BQ16 436 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 MAGIXQ9H6Y5 334 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 C14orf166Q9Y224 244 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 SOCS5O75159 536 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC35E2BP0CK96 405 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 TCEA1P23193 301 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 MAP2K4P45985 399 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 SEC13P55735 322 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 GPR17Q13304 367 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 TDGQ13569 410 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 GPR139Q6DWJ6 353 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 ENPP7Q6UWV6 458 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 CARM1Q86X55 608 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 MFSD2AQ8NA29 543 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 OR8J1Q8NGP2 316 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 THEM6Q8WUY1 208 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 OR5P2Q8WZ92 322 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 IMP4Q96G21 291 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 MGLLQ99685 303 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 PIP5K1AQ99755 562 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 TAS2R9Q9NYW1 312 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 RHCGQ9UBD6 479 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 ABCD2Q9UBJ2 740 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 IFT52Q9Y366 437 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 E9PI62 339 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 TFPTP0C1Z6 253 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SERPINF1P36955 418 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 CAV3P56539 151 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SAMD12Q8N8I0 201 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 AVL9Q8NBF6 648 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 OR4K1Q8NGD4 311 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 NEDD4LQ96PU5 975 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 RANBP9Q96S59 729 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SDHAF3Q9NRP4 125 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SH2B3Q9UQQ2 575 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 TRAV6A0A075B6T7 132 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 EDDM13A0A1B0GTR0 161 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 MYOCOSA0A1B0GUC4 107 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC16A5O15375 505 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC2A5P22732 501 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 PRKAR1BP31321 381 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 GHRHRQ02643 423 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 DECR1Q16698 335 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 LCN8Q6JVE9 175 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 BLOC1S3Q6QNY0 202 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 ASRGL1Q7L266 308 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 MMAAQ8IVH4 418 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 DNAAF1Q8NEP3 725 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 C16orf58Q96GQ5 468 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SOX17Q9H6I2 414 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 UFSP2Q9NUQ7 469 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 PPP4R1LQ9P1A2 415 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SRRDQ9UH36 339 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 TTLL8A6PVC2 850 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 NPIPA5E9PKD4 350 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 ATP6V1G2-DDX39BF2Z307 99 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 HCRTO43612 131 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC16A8O95907 504 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 HSD17B1P14061 328 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 EVI2BP34910 448 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 MAGEB1P43366 347 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC6A9P48067 706 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 CHAF1BQ13112 559 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 UGT8Q16880 541 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 BAIAP2L2Q6UXY1 529 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 PLEKHG7Q6ZR37 379 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 NRSN1Q8IZ57 195 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SMPDL3BQ92485 455 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 MAELQ96JY0 434 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 XYLT2Q9H1B5 865 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 NPIPA1Q9UND3 350 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 KAT6AQ92794 2004 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 C13orf42A0A1B0GVH6 325 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 A0A1W2PQ45 241 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 A0A1W2PQY0 241 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SMIM30A4D0T7 59 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 CCDC85CA6NKD9 419 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 F8W036 122 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 CERS1P27544 350 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 DCKP27707 260 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 OR1E2P47887 323 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 BLOC1S1P78537 153 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 PTPRCAPQ14761 206 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 PUS10Q3MIT2 529 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 TXNDC8Q6A555 127 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC29A4Q7RTT9 530 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 SMIM15Q7Z3B0 74 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 OR51G2Q8NGK0 314 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 FCAMRQ8WWV6 532 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 DPYSL5Q9BPU6 564 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 CRTAC1Q9NQ79 661 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 ARMC1Q9NVT9 282 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 OARD1Q9Y530 152 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 PCDHB14Q9Y5E9 798 aa9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 MAGED1Q9Y5V3 778 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-203ENST00000396595 TEX13DA0A0J9YY54 714 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-203ENST00000396595 PIRO00625 290 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms