RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 KCNC3Q14003 757 aa13.46□□□□□ -0.25
COL4A3-202ENST00000396578 NFE2L1Q14494 772 aa13.46□□□□□ -0.25
COL4A3-202ENST00000396578 DHCR24Q15392 516 aa13.46□□□□□ -0.25
COL4A3-202ENST00000396578 ESX1Q8N693 406 aa13.46□□□□□ -0.25
COL4A3-202ENST00000396578 OR7G2Q8NG99 324 aa13.46□□□□□ -0.25
COL4A3-202ENST00000396578 TMEM45AQ9NWC5 275 aa13.46□□□□□ -0.25
COL4A3-202ENST00000396578 CFAP20Q9Y6A4 193 aaKnown RBP13.46□□□□□ -0.25
COL4A3-202ENST00000396578 BCL9O00512 1426 aa13.46□□□□□ -0.26
COL4A3-202ENST00000396578 KIAA0513O60268 411 aa13.46□□□□□ -0.26
COL4A3-202ENST00000396578 CBLP22681 906 aa13.46□□□□□ -0.26
COL4A3-202ENST00000396578 PHF19Q5T6S3 580 aa13.46□□□□□ -0.26
COL4A3-202ENST00000396578 GPR157Q5UAW9 335 aa13.46□□□□□ -0.26
COL4A3-202ENST00000396578 TMEM205Q6UW68 189 aa13.46□□□□□ -0.26
COL4A3-202ENST00000396578 CMASQ8NFW8 434 aaPredicted RBP13.46□□□□□ -0.26
COL4A3-202ENST00000396578 PPIL3Q9H2H8 161 aaKnown RBP13.46□□□□□ -0.26
COL4A3-202ENST00000396578 TTC24A2A3L6 582 aaPredicted RBP13.46□□□□□ -0.26
COL4A3-202ENST00000396578 HHLA1C9JL84 531 aa13.46□□□□□ -0.26
COL4A3-202ENST00000396578 LSSP48449 732 aa13.46□□□□□ -0.26
COL4A3-202ENST00000396578 HYAL2Q12891 473 aa13.46□□□□□ -0.26
COL4A3-202ENST00000396578 TIFABQ6ZNK6 161 aa13.46□□□□□ -0.26
COL4A3-202ENST00000396578 DPY19L3Q6ZPD9 716 aa13.46□□□□□ -0.26
COL4A3-202ENST00000396578 ZNF283Q8N7M2 679 aa13.46□□□□□ -0.26
COL4A3-202ENST00000396578 BIN3Q9NQY0 253 aa13.46□□□□□ -0.26
COL4A3-202ENST00000396578 MLLT1Q03111 559 aaPredicted RBP13.45□□□□□ -0.26
COL4A3-202ENST00000396578 SNTB2Q13425 540 aaKnown RBP13.45□□□□□ -0.26
COL4A3-202ENST00000396578 MFSD13AQ14CX5 517 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 FTMTQ8N4E7 242 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 WDSUB1Q8N9V3 476 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 ZDHHC1Q8WTX9 485 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 JPH3Q8WXH2 748 aaPredicted RBP13.45□□□□□ -0.26
COL4A3-202ENST00000396578 BORCS7Q96B45 105 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 SH3PXD2BA1X283 911 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 RFPL2O75678 378 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 PAHP00439 452 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 CKMT1AP12532 417 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 OXTRP30559 389 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 GINS1Q14691 196 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 SLC35B2Q8TB61 432 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 KCNA7Q96RP8 456 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 DOHHQ9BU89 302 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 TDP1Q9NUW8 608 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 PCDHGA2Q9Y5H1 932 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 H3BUI4 141 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 B4GALT2O60909 372 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 PORP16435 677 aaPredicted RBP13.45□□□□□ -0.26
COL4A3-202ENST00000396578 ZNF84P51523 738 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 GABARAPL2P60520 117 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 INAVAQ3KP66 663 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 ADGRF1Q5T601 910 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 NANOGP8Q6NSW7 305 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 TRUB1Q8WWH5 349 aaKnown RBP13.45□□□□□ -0.26
COL4A3-202ENST00000396578 LGALS12Q96DT0 336 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 PIP5K1AQ99755 562 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 NANOGQ9H9S0 305 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 NPIPA2E9PIF3 369 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 NPIPA3F8WFD2 350 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 ZNF30P17039 623 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 AKR1C4P17516 323 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 TMEM53Q6P2H8 277 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 ABHD5Q8WTS1 349 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 SNAP29O95721 258 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 C8AP07357 584 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 POLR2HP52434 150 aaKnown RBP13.45□□□□□ -0.26
COL4A3-202ENST00000396578 MLIPQ5VWP3 458 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 TMEM225Q6GV28 225 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 TMEM234Q8WY98 164 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 REEP4Q9H6H4 257 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 SLA2Q9H6Q3 261 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 STATHP02808 62 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 C8orf89P0DMQ9 161 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 CCBE1Q6UXH8 406 aaPredicted RBP13.45□□□□□ -0.26
COL4A3-202ENST00000396578 OR9A1PQ8NGU1 263 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 CYB5D2Q8WUJ1 264 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 SECISBP2Q96T21 854 aaKnown RBP13.45□□□□□ -0.26
COL4A3-202ENST00000396578 ZNF175Q9Y473 711 aa13.45□□□□□ -0.26
COL4A3-202ENST00000396578 A0A0A6YYH2 397 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 A6NJ64 397 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 F8W036 122 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 LRRTM2O43300 516 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 NUDT7P0C024 238 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 BLOC1S1P78537 153 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 SCGB2A2Q13296 93 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 ZNF678Q5SXM1 525 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 ATG9BQ674R7 924 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 TOR1AIP2Q8NFQ8 470 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 RXFP3Q9NSD7 469 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 HOXB13Q92826 284 aaPredicted RBP13.44□□□□□ -0.26
COL4A3-202ENST00000396578 APOBEC3GQ9HC16 384 aaKnown RBP13.44□□□□□ -0.26
COL4A3-202ENST00000396578 SETD1AO15047 1707 aaKnown RBP13.44□□□□□ -0.26
COL4A3-202ENST00000396578 A0A1W2PPK0 400 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 A8MVJ9 347 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 ATG12O94817 140 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 SOX30O94993 753 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 KLK3P07288 261 aaPredicted RBP13.44□□□□□ -0.26
COL4A3-202ENST00000396578 ZNF767PQ75MW2 155 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 DEFB118Q96PH6 123 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 FAIMQ9NVQ4 179 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 RIPK3Q9Y572 518 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 TMEM14AQ9Y6G1 99 aa13.44□□□□□ -0.26
COL4A3-202ENST00000396578 A0A096LPI6 279 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms