RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ARHGEF17Q96PE2 2063 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-205ENST00000392004 IGHV3-20A0A0C4DH32 117 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 A0A1W2PPW3 197 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 PDPK1O15530 556 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 NPHS1O60500 1241 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 SP9P0CG40 484 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 CSNK2A2P19784 350 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-205ENST00000392004 ANXA11P50995 505 aaKnown RBP9.81□□□□□ -0.84
COL6A3-205ENST00000392004 CHRNB3Q05901 458 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 SYT16Q17RD7 645 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 GAB4Q2WGN9 574 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.81□□□□□ -0.84
COL6A3-205ENST00000392004 C6orf136Q5SQH8 315 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 DEF8Q6ZN54 512 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF547Q8IVP9 402 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 MICU2Q8IYU8 434 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 CBR4Q8N4T8 237 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 LYSMD1Q96S90 227 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 C9orf16Q9BUW7 83 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 POT1Q9NUX5 634 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 ANKRD10Q9NXR5 420 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 IKZF3Q9UKT9 509 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 NAALAD2Q9Y3Q0 740 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 DIDO1Q9BTC0 2240 aaKnown RBP9.81□□□□□ -0.84
COL6A3-205ENST00000392004 PIEZO2Q9H5I5 2752 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 FAM227AF5H4B4 570 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 KPNA4O00629 521 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-205ENST00000392004 C8BP07358 591 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 POU2F2P09086 479 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 SPINK2P20155 84 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 FASP25445 335 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 DPP6P42658 865 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 SQLEQ14534 574 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 NOXRED1Q6NXP6 359 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 CCDC80Q76M96 950 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 RAB11FIP2Q7L804 512 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 ZBTB46Q86UZ6 589 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 COX18Q8N8Q8 333 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF420Q8TAQ5 688 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-205ENST00000392004 ADI1Q9BV57 179 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 HAT1O14929 419 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 TRAPPC6AO75865 159 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 C6orf47O95873 294 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 NR2F6P10588 404 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 FUT4P22083 530 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 PSMA4P25789 261 aaKnown RBP9.81□□□□□ -0.84
COL6A3-205ENST00000392004 MPIP34949 423 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 DCDC1P59894 354 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 CCL7P80098 99 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 MOGQ16653 247 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 OGFOD2Q6N063 350 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 FAM199XQ6PEV8 388 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-205ENST00000392004 SBSNQ6UWP8 590 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 ABRAXAS1Q6UWZ7 409 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 DCDC5Q6ZRR9 648 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 COMMD6Q7Z4G1 85 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 PRR22Q8IZ63 422 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 TTLQ8NG68 377 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 OR5T3Q8NGG3 340 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF563Q8TA94 476 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 RHEBL1Q8TAI7 183 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 TMEM74Q96NL1 305 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 ATOH8Q96SQ7 321 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 SH3BGRL2Q9UJC5 107 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 CROCCQ5TZA2 2017 aa9.81□□□□□ -0.84
COL6A3-205ENST00000392004 VWA8A3KMH1 1905 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 A0A0J9YY10 115 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 LMO7DNF2Z398 122 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 CD1EP15812 388 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 TCN2P20062 427 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 SLC6A2P23975 617 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 NUDT1P36639 197 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 FOXL2P58012 376 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 COPZ1P61923 177 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 DPTQ07507 201 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 BTBD16Q32M84 506 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 REP15Q6BDI9 236 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 NIPAL1Q6NVV3 410 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 TRIM69Q86WT6 500 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 NAGSQ8N159 534 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 DHRSXQ8N5I4 330 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 ARL10Q8N8L6 244 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 OR52J3Q8NH60 311 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 RPF2Q9H7B2 306 aaKnown RBP9.8□□□□□ -0.84
COL6A3-205ENST00000392004 WASHC1A8K0Z3 465 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 H7C0S8 307 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 PLOD2O00469 737 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 SERPINB7O75635 380 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 TCF3P15923 654 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 BNC1Q01954 994 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 WASH2PQ6VEQ5 465 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 TMEM64Q6YI46 380 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 PACRGLQ8N7B6 248 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 OR2L3Q8NG85 312 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 PROX1Q92786 737 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 ALG2Q9H553 416 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF624Q9P2J8 865 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-205ENST00000392004 TMED5Q9Y3A6 229 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 PTPRQQ9UMZ3 2332 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 GFRA3O60609 400 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms