RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 IFNA2P01563 188 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 GALTP07902 379 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 FPR1P21462 350 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 RBMXP38159 391 aaKnown RBP13.18□□□□□ -0.3
COL4A1-201ENST00000375820 ZNF404Q494X3 552 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 IER5LQ5T953 404 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 PDSS2Q86YH6 399 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 OR4K14Q8NGD5 310 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 TP63Q9H3D4 680 aaPredicted RBP13.18□□□□□ -0.3
COL4A1-201ENST00000375820 A0A1W2PP18 115 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 EPCAMP16422 314 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 CNKSR3Q6P9H4 555 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 TMPRSS12Q86WS5 348 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 NUP43Q8NFH3 380 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 BRI3BPQ8WY22 251 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 ZBTB20Q9HC78 741 aaPredicted RBP13.18□□□□□ -0.3
COL4A1-201ENST00000375820 SLC39A1Q9NY26 324 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 DHDHQ9UQ10 334 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 CSTAP01040 98 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 STC1P52823 247 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 PLP2Q04941 152 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 GPR157Q5UAW9 335 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 ASB6Q9NWX5 421 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 ACTR3BQ9P1U1 418 aa13.18□□□□□ -0.3
COL4A1-201ENST00000375820 LRRN3E7EW58 273 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 FAM72CH0Y354 149 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 RAD1O60671 282 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 ASGR2P07307 311 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 ADORA3P0DMS8 318 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 TMEM69Q5SWH9 247 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 FAM72AQ5TYM5 149 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 FAM72DQ6L9T8 149 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 FAM72BQ86X60 149 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 ELMOD2Q8IZ81 293 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 NECAB3Q96P71 396 aaPredicted RBP13.17□□□□□ -0.3
COL4A1-201ENST00000375820 SMOC2Q9H3U7 446 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 LRRN3Q9H3W5 708 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 TAS2R9Q9NYW1 312 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 SCP2D1Q9UJQ7 156 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 CLCA1A8K7I4 914 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 RP2O75695 350 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 SRPRAP08240 638 aaKnown RBP13.17□□□□□ -0.3
COL4A1-201ENST00000375820 ZNF763Q0D2J5 394 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 IL22RA1Q8N6P7 574 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 NEIL3Q8TAT5 605 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 THAP4Q8WY91 577 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 KLHL15Q96M94 604 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 MUS81Q96NY9 551 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 GPR174Q9BXC1 333 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 TM9SF3Q9HD45 589 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.17□□□□□ -0.3
COL4A1-201ENST00000375820 C19orf25Q9UFG5 118 aaPredicted RBP13.17□□□□□ -0.3
COL4A1-201ENST00000375820 ASB3Q9Y575 518 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 BACE2Q9Y5Z0 518 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 RTCAO00442 366 aaKnown RBP13.17□□□□□ -0.3
COL4A1-201ENST00000375820 ZNF821O75541 412 aaPredicted RBP13.17□□□□□ -0.3
COL4A1-201ENST00000375820 S1PR1P21453 382 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 DCDC5Q6ZRR9 648 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 KIF18BQ86Y91 864 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 ZNF584Q8IVC4 421 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 DCUN1D3Q8IWE4 304 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 COCHO43405 550 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 RAD51DO75771 328 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 EBLN1P0CF75 366 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 ARRB1P49407 418 aaPredicted RBP13.17□□□□□ -0.3
COL4A1-201ENST00000375820 TRAM2Q15035 370 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 LPAL2Q16609 132 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 SLC36A3Q495N2 470 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 REEP3Q6NUK4 255 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 REM2Q8IYK8 340 aaPredicted RBP13.17□□□□□ -0.3
COL4A1-201ENST00000375820 FCRL3Q96P31 734 aaPredicted RBP13.17□□□□□ -0.3
COL4A1-201ENST00000375820 ERVK13-1Q9NX77 482 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 TEX264Q9Y6I9 313 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 MTMR11A4FU01 709 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 FAM171A2A8MVW0 826 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 M0R233 179 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 DFNA5O60443 496 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 CD9P21926 228 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 GLDCP23378 1020 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 KLBQ86Z14 1044 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 SLC29A3Q9BZD2 475 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 ACTL8Q9H568 366 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 REEP4Q9H6H4 257 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 PPP4R1LQ9P1A2 415 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 TMED5Q9Y3A6 229 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 HCN4Q9Y3Q4 1203 aa13.17□□□□□ -0.3
COL4A1-201ENST00000375820 CA12O43570 354 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 TPPPO94811 219 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 PEPDP12955 493 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 INAVAQ3KP66 663 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 TMPPEQ6ZT21 453 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 ERMP1Q7Z2K6 904 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 TRAPPC6BQ86SZ2 158 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 OR6C4Q8NGE1 309 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 PGAM5Q96HS1 289 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 NLE1Q9NVX2 485 aaPredicted RBP13.16□□□□□ -0.3
COL4A1-201ENST00000375820 FAM120CQ9NX05 1096 aaKnown RBP13.16□□□□□ -0.3
COL4A1-201ENST00000375820 AMY2BP19961 511 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 FBLP22087 321 aaKnown RBP13.16□□□□□ -0.3
COL4A1-201ENST00000375820 OXTRP30559 389 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms