RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 SMAD3P84022 425 aaKnown RBP13.07□□□□□ -0.32
USP49-201ENST00000373006 CYP4F8P98187 520 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 PTSQ03393 145 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.07□□□□□ -0.32
USP49-201ENST00000373006 FCHO2Q0JRZ9 810 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 QPRTQ15274 297 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 TATDN3Q17R31 274 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 BTBD16Q32M84 506 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 LIPJQ5W064 366 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 CST9Q5W186 159 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 IQCF1Q8N6M8 205 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 LSMEM1Q8N8F7 131 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 GEMIN6Q8WXD5 167 aaKnown RBP13.07□□□□□ -0.32
USP49-201ENST00000373006 SLC25A46Q96AG3 418 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 PLD4Q96BZ4 506 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 C1GALT1Q9NS00 363 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 COMMD3Q9UBI1 195 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 PLEKHB1Q9UF11 243 aaPredicted RBP13.07□□□□□ -0.32
USP49-201ENST00000373006 NDRG2Q9UN36 371 aaKnown RBP13.07□□□□□ -0.32
USP49-201ENST00000373006 CCDC88CQ9P219 2028 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 HYKKA2RU49 373 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 ARHGEF9O43307 516 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 MPZL2O60487 215 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 ZNF780AO75290 641 aaPredicted RBP13.06□□□□□ -0.32
USP49-201ENST00000373006 ELNP15502 786 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 TNNI3P19429 210 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 LIMS1P48059 325 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 MAN2A2P49641 1150 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 LIM2P55344 173 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 RPS26P62854 115 aaKnown RBP13.06□□□□□ -0.32
USP49-201ENST00000373006 SEC23BQ15437 767 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 RPS26P11Q5JNZ5 115 aaPredicted RBP13.06□□□□□ -0.32
USP49-201ENST00000373006 CDKL4Q5MAI5 379 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 FAM109AQ8N4B1 249 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 OR8H1Q8NGG4 311 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 DEDD2Q8WXF8 326 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 OR4K3Q96R72 315 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 SLC22A12Q96S37 553 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 THSD1Q9NS62 852 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 TMPRSS11EQ9UL52 423 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 CLEC4EQ9ULY5 219 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 ENPP4Q9Y6X5 453 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 GFYI3L273 518 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 RFXAPO00287 272 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 MYL12BO14950 172 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 OR10H3O60404 316 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 TPST2O60704 377 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 LHCGRP22888 699 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 CCND3P30281 292 aaPredicted RBP13.06□□□□□ -0.32
USP49-201ENST00000373006 FLT3LGP49771 235 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 ZNF91Q05481 1191 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 PUM1Q14671 1186 aaKnown RBP eCLIP13.06□□□□□ -0.32
USP49-201ENST00000373006 ZMYND11Q15326 602 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 FUT10Q6P4F1 479 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 XKRXQ6PP77 449 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 PLET1Q6UQ28 207 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 LILRA3Q8N6C8 439 aaPredicted RBP13.06□□□□□ -0.32
USP49-201ENST00000373006 OR7G3Q8NG95 312 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 C1GALT1C1Q96EU7 318 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 SLC6A18Q96N87 628 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 WDFY2Q96P53 400 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 DHRS9Q9BPW9 319 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 TSSK6Q9BXA6 273 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 RWDD3Q9Y3V2 267 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 SCN10AQ9Y5Y9 1956 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 CIB4A0PJX0 185 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 EOMESO95936 686 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 RECKO95980 971 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 IFNW1P05000 195 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 TRAPPC2P0DI81 140 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 TRAPPC2BP0DI82 140 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 ZNF8P17098 575 aaPredicted RBP13.06□□□□□ -0.32
USP49-201ENST00000373006 OR1D2P34982 312 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 ASMTP46597 345 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 PLD1Q13393 1074 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 TRIM69Q86WT6 500 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 NANOGP1Q8N7R0 232 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 OR52N2Q8NGI0 321 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 CHTF18Q8WVB6 975 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 ALG14Q96F25 216 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 MND1Q9BWT6 205 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 BRD9Q9H8M2 597 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 NDUFB11Q9NX14 153 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 TVP23BQ9NYZ1 205 aa13.06□□□□□ -0.32
USP49-201ENST00000373006 IQCMA0A1B0GVH7 501 aa13.05□□□□□ -0.32
USP49-201ENST00000373006 SLC35F4A4IF30 521 aa13.05□□□□□ -0.32
USP49-201ENST00000373006 AGAP14A8MT82 685 aa13.05□□□□□ -0.32
USP49-201ENST00000373006 RNASET2O00584 256 aaKnown RBP13.05□□□□□ -0.32
USP49-201ENST00000373006 TLX2O43763 284 aaPredicted RBP13.05□□□□□ -0.32
USP49-201ENST00000373006 ALPPP05187 535 aa13.05□□□□□ -0.32
USP49-201ENST00000373006 STK19P49842 368 aaPredicted RBP13.05□□□□□ -0.32
USP49-201ENST00000373006 HMGA2P52926 109 aa13.05□□□□□ -0.32
USP49-201ENST00000373006 IRF5Q13568 498 aa13.05□□□□□ -0.32
USP49-201ENST00000373006 MBTPS1Q14703 1052 aa13.05□□□□□ -0.32
USP49-201ENST00000373006 CASP12Q6UXS9 341 aa13.05□□□□□ -0.32
USP49-201ENST00000373006 RBM45Q8IUH3 476 aaKnown RBP13.05□□□□□ -0.32
USP49-201ENST00000373006 MMP21Q8N119 569 aa13.05□□□□□ -0.32
USP49-201ENST00000373006 SCAMP4Q969E2 229 aa13.05□□□□□ -0.32
USP49-201ENST00000373006 NELL2Q99435 816 aa13.05□□□□□ -0.32
USP49-201ENST00000373006 TM9SF2Q99805 663 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms