RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 HTR2AP28223 471 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 FLT3LGP49771 235 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 PRRT2Q7Z6L0 340 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 PDZD9Q8IXQ8 264 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 CD300LFQ8TDQ1 290 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 GNPDA2Q8TDQ7 276 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 SLC5A11Q8WWX8 675 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 SMPDL3AQ92484 453 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 TCRBV3S1A0A5B6 114 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 LYRM1O43325 122 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 MAPK3P27361 379 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 ZMYND11Q15326 602 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 KLBQ86Z14 1044 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 L3HYPDHQ96EM0 354 aa18.77■□□□□ 0.6
CCDC88B-202ENST00000356786 C7orf72A4D263 438 aa18.77■□□□□ 0.59
CCDC88B-202ENST00000356786 POP7O75817 140 aaKnown RBP18.77■□□□□ 0.59
CCDC88B-202ENST00000356786 HTR1AP08908 422 aa18.77■□□□□ 0.59
CCDC88B-202ENST00000356786 ILF3Q12906 894 aaKnown RBP eCLIP18.77■□□□□ 0.59
CCDC88B-202ENST00000356786 PGM2L1Q6PCE3 622 aa18.77■□□□□ 0.59
CCDC88B-202ENST00000356786 OR56A1Q8NGH5 318 aa18.77■□□□□ 0.59
CCDC88B-202ENST00000356786 SNAPC3Q92966 411 aa18.77■□□□□ 0.59
CCDC88B-202ENST00000356786 MAGED1Q9Y5V3 778 aaPredicted RBP18.77■□□□□ 0.59
CCDC88B-202ENST00000356786 CICQ96RK0 1608 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 ZNF878C9JN71 531 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 CREBL2O60519 120 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 AOC2O75106 756 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 ZNF14P17017 642 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 FDXRP22570 491 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 CNR2P34972 360 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 PREPP48147 710 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 RAB8AP61006 207 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 MAD2L1BPQ15013 274 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 AGAP6Q5VW22 663 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 DCP2Q8IU60 420 aaKnown RBP18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 SYNPOQ8N3V7 929 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 NETO1Q8TDF5 533 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 C2orf15Q8WU43 125 aaKnown RBP18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 AGAP4Q96P64 663 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 OR2S2Q9NQN1 319 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 PKD1L3Q7Z443 1732 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 SLC31A1O15431 190 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 KDELR3O43731 214 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 HAPLN1P10915 354 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 ACP5P13686 325 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 PRKACAP17612 351 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 MEF2AQ02078 507 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 TSPAN33Q86UF1 283 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 GID4Q8IVV7 300 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 TMEM145Q8NBT3 493 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 TFGQ92734 400 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 MYH15Q9Y2K3 1946 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 GNRH1P01148 92 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 RHCEP18577 417 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 EIF2S3P41091 472 aaKnown RBP18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 ARSIQ5FYB1 569 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 TMEM69Q5SWH9 247 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 OTUB2Q96DC9 234 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 NXPE2Q96DL1 559 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 P2RY13Q9BPV8 354 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 OR51E2Q9H255 320 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 GPN3Q9UHW5 284 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 EMCNQ9ULC0 261 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 ERVW-1Q9UQF0 538 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 NDUFS4O43181 175 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 GTF2F2P13984 249 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 VAMP2P63027 116 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 LRP8Q14114 963 aa18.76■□□□□ 0.59
CCDC88B-202ENST00000356786 GLOD5A6NK44 160 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 ZNF705EA8MWA4 302 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 MAFKO60675 156 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 CAPN15O75808 1086 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 EOMESO95936 686 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 DRD5P21918 477 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 Q6ZVU0 165 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 NPWQ8N729 165 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 PNPLA1Q8N8W4 532 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 DNMT3AQ9Y6K1 912 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 SELPP16109 830 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 UQCRC2P22695 453 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 SLC6A6P31641 620 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 ACVR1BP36896 505 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 RPL35P42766 123 aaKnown RBP18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 EMX1Q04741 257 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 NFATC2Q13469 925 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 CES4AQ5XG92 561 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 SFRP4Q6FHJ7 346 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 OR2T33Q8NG76 320 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 SETD6Q8TBK2 473 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 RAB11FIP5Q9BXF6 653 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 YARS2Q9Y2Z4 477 aaKnown RBP18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 TEX13CA0A0J9YWL9 993 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 CLCNKAP51800 687 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 SPCS2Q15005 226 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 COL28A1Q2UY09 1125 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 C11orf91Q3C1V1 193 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 SLC2A13Q96QE2 648 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 MRPL15Q9P015 296 aaKnown RBP18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 PIRO00625 290 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 CAPNS1P04632 268 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms