RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ARL1P40616 181 aaPredicted RBP17.12■□□□□ 0.33
CLN3-202ENST00000355477 HLCSP50747 726 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 HNRNPH2P55795 449 aaKnown RBP17.12■□□□□ 0.33
CLN3-202ENST00000355477 TRAF3Q13114 568 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 CUL3Q13618 768 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 FAM219BQ5XKK7 198 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 C18orf63Q68DL7 685 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 HIST2H2BCQ6DN03 193 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 SLC25A25Q6KCM7 469 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 C16orf47Q6ZP98 133 aaPredicted RBP17.12■□□□□ 0.33
CLN3-202ENST00000355477 GALNTL5Q7Z4T8 443 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 GPR180Q86V85 440 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 ZCCHC7Q8N3Z6 543 aaKnown RBP17.12■□□□□ 0.33
CLN3-202ENST00000355477 ZNF321PQ8N8H1 164 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 SREK1Q8WXA9 508 aaKnown RBP17.12■□□□□ 0.33
CLN3-202ENST00000355477 C5orf34Q96MH7 638 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 LIN28AQ9H9Z2 209 aaKnown RBP17.12■□□□□ 0.33
CLN3-202ENST00000355477 SEMA4BQ9NPR2 832 aaPredicted RBP17.12■□□□□ 0.33
CLN3-202ENST00000355477 PSD3Q9NYI0 1048 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 TMEM216Q9P0N5 145 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 ATG4BQ9Y4P1 393 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 CLCA3PQ9Y6N3 262 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 SPACA6W5XKT8 324 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 CELSR2Q9HCU4 2923 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 WASHC1A8K0Z3 465 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 A8MT66 165 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 CDK2AP1O14519 115 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 FGF17O60258 216 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 PRKRAO75569 313 aaKnown RBP17.11■□□□□ 0.33
CLN3-202ENST00000355477 SLC25A12O75746 678 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 UNC5CO95185 931 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 RPS17P08708 135 aaKnown RBP17.11■□□□□ 0.33
CLN3-202ENST00000355477 TSPAN8P19075 237 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 CYB561P49447 251 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 PHEXP78562 749 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 MAPKAPK3Q16644 382 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 GFRALQ6UXV0 394 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.11■□□□□ 0.33
CLN3-202ENST00000355477 HORMAD2Q8N7B1 307 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 TMEM178AQ8NBL3 297 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 ZNF483Q8TF39 744 aaPredicted RBP17.11■□□□□ 0.33
CLN3-202ENST00000355477 MTBPQ96DY7 904 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 CENPKQ9BS16 269 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 RPF2Q9H7B2 306 aaKnown RBP17.11■□□□□ 0.33
CLN3-202ENST00000355477 PLEKHB1Q9UF11 243 aaPredicted RBP17.11■□□□□ 0.33
CLN3-202ENST00000355477 ASB4Q9Y574 426 aa17.11■□□□□ 0.33
CLN3-202ENST00000355477 ITPR2Q14571 2701 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 A0A0A6YYD5 115 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 A1L4Q6 167 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 ASPDHA6ND91 283 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 SYNDIG1LA6NDD5 238 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 C17orf105B2RV13 164 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 GOLGA8RI6L899 631 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 FCHO1O14526 889 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 PROM1O43490 865 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 TMPRSS11DO60235 418 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 NME2P1O60361 137 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 ITGA10O75578 1167 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 ZFAND5O76080 213 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 STSP08842 583 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 TNNI3P19429 210 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 NME2P22392 152 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 ARFIP1P53367 373 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 CDH13P55290 713 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 IGLV3-21P80748 117 aaPredicted RBP17.1■□□□□ 0.33
CLN3-202ENST00000355477 TNFRSF17Q02223 184 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 SERTAD2Q14140 314 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 C4orf17Q53FE4 359 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 TEX35Q5T0J7 233 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 FRG2Q64ET8 278 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 MRM1Q6IN84 353 aaKnown RBP17.1■□□□□ 0.33
CLN3-202ENST00000355477 MILR1Q7Z6M3 343 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 MORN4Q8NDC4 146 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 OR4F6Q8NGB9 312 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 MZB1Q8WU39 189 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 DAZLQ92904 295 aaKnown RBP17.1■□□□□ 0.33
CLN3-202ENST00000355477 UCN3Q969E3 161 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 FRMD6Q96NE9 622 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 FRG2BQ96QU4 278 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 CCDC77Q9BR77 488 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 OR8D2Q9GZM6 311 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 DDX31Q9H8H2 851 aaKnown RBP17.1■□□□□ 0.33
CLN3-202ENST00000355477 L2HGDHQ9H9P8 463 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 SEC14L3Q9UDX4 400 aa17.1■□□□□ 0.33
CLN3-202ENST00000355477 A0A1W2PR48 441 aa17.09■□□□□ 0.33
CLN3-202ENST00000355477 FOXO6A8MYZ6 492 aa17.09■□□□□ 0.33
CLN3-202ENST00000355477 GBAP04062 536 aa17.09■□□□□ 0.33
CLN3-202ENST00000355477 FOLH1Q04609 750 aa17.09■□□□□ 0.33
CLN3-202ENST00000355477 DGAT2L6Q6ZPD8 337 aa17.09■□□□□ 0.33
CLN3-202ENST00000355477 OR14A16Q8NHC5 309 aa17.09■□□□□ 0.33
CLN3-202ENST00000355477 SLC2A12Q8TD20 617 aa17.09■□□□□ 0.33
CLN3-202ENST00000355477 PPWD1Q96BP3 646 aaKnown RBP17.09■□□□□ 0.33
CLN3-202ENST00000355477 C1QTNF3Q9BXJ4 246 aa17.09■□□□□ 0.33
CLN3-202ENST00000355477 TSPAN10Q9H1Z9 355 aaPredicted RBP17.09■□□□□ 0.33
CLN3-202ENST00000355477 MS4A12Q9NXJ0 267 aa17.09■□□□□ 0.33
CLN3-202ENST00000355477 FETUBQ9UGM5 382 aa17.09■□□□□ 0.33
CLN3-202ENST00000355477 TBK1Q9UHD2 729 aa17.09■□□□□ 0.33
CLN3-202ENST00000355477 PHF11Q9UIL8 331 aa17.09■□□□□ 0.33
CLN3-202ENST00000355477 ZNF225Q9UK10 706 aa17.09■□□□□ 0.33
CLN3-202ENST00000355477 PPT2Q9UMR5 302 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms