RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PRMT5O14744 637 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 PER2O15055 1255 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CASC3O15234 703 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 GYG2O15488 501 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 LATO43561 262 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 LCMT2O60294 686 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 MTX2O75431 263 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 AP2A2O94973 939 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SLC25A14O95258 325 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 CXCL14O95715 111 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CA3P07451 260 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 HOXC4P09017 264 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 TSPAN19P0C672 248 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 THRAP10827 490 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 RAC2P15153 192 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ZNF30P17039 623 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 STT3AP46977 705 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 HSPA7P48741 367 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 DAPP51397 102 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 DGKQP52824 942 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 HMGA2P52926 109 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CLDN8P56748 225 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CREMQ03060 361 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 TAP2Q03519 686 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 FOLH1Q04609 750 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 AQP6Q13520 282 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 PRPSAP1Q14558 356 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CLCA4Q14CN2 919 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 MLANAQ16655 118 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 METRNLQ641Q3 311 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ATG9BQ674R7 924 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 GRHL2Q6ISB3 625 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ZNF425Q6IV72 752 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CAPN13Q6MZZ7 669 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 CERS6Q6ZMG9 384 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 FRA10AC1Q70Z53 315 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SFTPA2Q8IWL1 248 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 HS3ST5Q8IZT8 346 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 KRT78Q8N1N4 520 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 NKAPQ8N5F7 415 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 C12orf76Q8N812 135 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 POGLUT1Q8NBL1 392 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SMRP1Q8NCR6 262 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SIMC1Q8NDZ2 872 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 GPR32P1Q8NGA4 272 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 OR2L2Q8NH16 312 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 FGF13Q92913 245 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 NEIL2Q969S2 332 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ELSPBP1Q96BH3 223 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 BIRC7Q96CA5 298 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 OTUB2Q96DC9 234 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CMTM5Q96DZ9 223 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CCDC126Q96EE4 140 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ZNF681Q96N22 645 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 RAB3IPQ96QF0 476 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 PITX2Q99697 317 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 OSBPL10Q9BXB5 764 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 NPLQ9BXD5 320 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 ENKD1Q9H0I2 346 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 EHD1Q9H4M9 534 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CERS4Q9HA82 394 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 BRF2Q9HAW0 419 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 MID1IP1Q9NPA3 183 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 HACD3Q9P035 362 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 IL36AQ9UHA7 158 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 CD84Q9UIB8 345 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ITGB1BP2Q9UKP3 347 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ABCG2Q9UNQ0 655 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ATP11BQ9Y2G3 1177 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 STK38LQ9Y2H1 464 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 LRCH1Q9Y2L9 728 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 LSM2Q9Y333 95 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 URB1O60287 2271 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 LY6G6EA0A0G2JKS1 128 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 C1orf232A0A0U1RR37 186 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 LOC100653049A0A140TA62 436 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 A0A1B0GVG6 124 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SH3D21A4FU49 640 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 GABRR3A8MPY1 467 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 RHPN2P1A8MT19 583 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 VGLL3A8MV65 326 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 K7EPI3 171 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 FOXE1O00358 373 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 BTN3A1O00481 513 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 PLPP1O14494 284 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 PPM1DO15297 605 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SH3BP5O60239 455 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 FZD7O75084 574 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 SKAP2O75563 359 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 KRT34O76011 436 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 IGHV4-34P06331 123 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ZCCHC18P0CG32 403 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 MBL2P11226 248 aaPredicted RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 NEFHP12036 1026 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 ADRB3P13945 408 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 DDX5P17844 614 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 RPS4Y1P22090 263 aaKnown RBP2.19□□□□□ -2.06
VPS54-202ENST00000354504 CHMP24386 653 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 EIF2DP41214 584 aaKnown RBP2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms