RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 GPALPP1Q8IXQ4 340 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 CELF5Q8N6W0 485 aaKnown RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 NFKBIDQ8NI38 313 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 TMEM163Q8TC26 289 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 UCN3Q969E3 161 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 PHF21AQ96BD5 680 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 MTERF3Q96E29 417 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 SORCS2Q96PQ0 1159 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 FRG2BQ96QU4 278 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 WACQ9BTA9 647 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 PIGUQ9H490 435 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 RDH14Q9HBH5 336 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 KCMF1Q9P0J7 381 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 NDOR1Q9UHB4 597 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 SPIN1Q9Y657 262 aaPredicted RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 AP1M2Q9Y6Q5 423 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 PIKFYVEQ9Y2I7 2098 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 TRPM7Q96QT4 1865 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 SHISA3A0PJX4 238 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 SGK494L7N484 410 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 SCAMP2O15127 329 aaKnown RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 LANCL1O43813 399 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 PRMT3O60678 531 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 PSIP1O75475 530 aaKnown RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 PRAMEF1O95521 474 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 PAHP00439 452 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 TRBC1P01850 177 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 ALPIP09923 528 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 ZNF7P17097 686 aaPredicted RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 PRKACAP17612 351 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 CD22P20273 847 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 CRATP43155 626 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 AVPR1BP47901 424 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 EPHA5P54756 1037 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 FABP5Q01469 135 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 UBE3AQ05086 875 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 DBPQ10586 325 aaPredicted RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 SCARB2Q14108 478 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 ANGPT1Q15389 498 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 SEC23BQ15437 767 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 SPDYE7PQ495Y7 208 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 PLK5Q496M5 336 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 CLLU1Q5K131 121 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 OR2G6Q5TZ20 316 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 RNLSQ5VYX0 342 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 C12orf73Q69YU5 71 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 TMEM81Q6P7N7 255 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 GPAT4Q86UL3 456 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 NPAS3Q8IXF0 933 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 TTC9BQ8N6N2 239 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 ZNF655Q8N720 491 aaPredicted RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 L3MBTL4Q8NA19 623 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 ZBTB44Q8NCP5 570 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 LSM14AQ8ND56 463 aaKnown RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 OR6C4Q8NGE1 309 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 OR52I1Q8NGK6 324 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 HUS1BQ8NHY5 278 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 CREB3L1Q96BA8 519 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 WBP1Q96G27 269 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 KLHL15Q96M94 604 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 ATF6BQ99941 703 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 DPCDQ9BVM2 203 aaPredicted RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 TMEM121BQ9BXQ6 578 aaPredicted RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 ARL15Q9NXU5 204 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 MARCH2Q9P0N8 246 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 SRRDQ9UH36 339 aa6.48□□□□□ -1.37
VPS39-202ENST00000348544 AFF4Q9UHB7 1163 aaKnown RBP6.48□□□□□ -1.37
VPS39-202ENST00000348544 H3BNC9 293 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 SH3BGRLO75368 114 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 MTRF1O75570 445 aaKnown RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 PPM1BO75688 479 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 APOL3O95236 402 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 CFDP00746 253 aaPredicted RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 SYPP08247 313 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ANXA5P08758 320 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 RRASP10301 218 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 TFPIP10646 304 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 CXCL3P19876 107 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 AOAHP28039 575 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 SLC6A1P30531 599 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 SSTR2P30874 369 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 CD79BP40259 229 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 BDKRB1P46663 353 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 RPIAP49247 311 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 MAP2K6P52564 334 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 LIM2P55344 173 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 SRP54P61011 504 aaKnown RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 RAE1P78406 368 aaKnown RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 EEF1A2Q05639 463 aaKnown RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 GPR176Q14439 515 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 FGFBP1Q14512 234 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ZNF284Q2VY69 593 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 CRTC2Q53ET0 693 aaPredicted RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 PLA1AQ53H76 456 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ZNF385BQ569K4 471 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 C10orf120Q5SQS8 335 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 BCL2L15Q5TBC7 163 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ADNP2Q6IQ32 1131 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ANGPTL8Q6UXH0 198 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 LIPIQ6XZB0 460 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms