RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SKILP12757 684 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 RPL9P32969 192 aaKnown RBP2.78□□□□□ -1.96
HMGB1-201ENST00000326004 CCR4P51679 360 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 BACE1P56817 501 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 BPIFB3P59826 476 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 ABCE1P61221 599 aaKnown RBP2.78□□□□□ -1.96
HMGB1-201ENST00000326004 GABPAQ06546 454 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 MFGE8Q08431 387 aaPredicted RBP2.78□□□□□ -1.96
HMGB1-201ENST00000326004 AP1B1Q10567 949 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 WASHC5Q12768 1159 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 MLF2Q15773 248 aaPredicted RBP2.78□□□□□ -1.96
HMGB1-201ENST00000326004 GLIPR1L2Q4G1C9 344 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 SLC39A12Q504Y0 691 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 IFI44LQ53G44 452 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 FAM182AQ5T1J6 154 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 SNRNP48Q6IEG0 339 aaKnown RBP2.78□□□□□ -1.96
HMGB1-201ENST00000326004 TMEM64Q6YI46 380 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 Q71RC1 249 aaPredicted RBP2.78□□□□□ -1.96
HMGB1-201ENST00000326004 FAM131BQ86XD5 332 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 MAPK1IP1LQ8NDC0 245 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 OR8H1Q8NGG4 311 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 OR6F1Q8NGZ6 308 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 SPATA18Q8TC71 538 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 SPPL2AQ8TCT8 520 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 C11orf52Q96A22 123 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 GAL3ST4Q96RP7 486 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 VGLL1Q99990 258 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 DDX50Q9BQ39 737 aaKnown RBP2.78□□□□□ -1.96
HMGB1-201ENST00000326004 OSBPL8Q9BZF1 889 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF665Q9H7R5 613 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 KCNK13Q9HB14 408 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 UBE2TQ9NPD8 197 aaPredicted RBP2.78□□□□□ -1.96
HMGB1-201ENST00000326004 MED17Q9NVC6 651 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 TEKT2Q9UIF3 430 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 MUTYHQ9UIF7 546 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 PILRAQ9UKJ1 303 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 KCNK6Q9Y257 313 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 KNSTRNQ9Y448 316 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 C3P01024 1663 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 HCFC1P51610 2035 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 NWD1Q149M9 1564 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 RALGAPA1Q6GYQ0 2036 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 CDK13Q14004 1512 aaKnown RBP2.78□□□□□ -1.97
HMGB1-201ENST00000326004 ABCA10Q8WWZ4 1543 aa2.78□□□□□ -1.97
HMGB1-201ENST00000326004 TCOF1Q13428 1488 aaKnown RBP2.77□□□□□ -1.97
HMGB1-201ENST00000326004 NEO1Q92859 1461 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 RAPGEF2Q9Y4G8 1499 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 SIGLEC1Q9BZZ2 1709 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 A0A1B0GU03 582 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 SMIM30A4D0T7 59 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 A8MU76 341 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 C19orf81C9J6K1 198 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 ANHXE9PGG2 379 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 SNAP91O60641 907 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 AKAP3O75969 853 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 SORBS2O94875 1100 aaKnown RBP2.77□□□□□ -1.97
HMGB1-201ENST00000326004 PNPP00491 289 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 MT-ND3P03897 115 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 ADORA3P0DMS8 318 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 ODC1P11926 461 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 KRT5P13647 590 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 GJB2P29033 226 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 OR1D2P34982 312 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 CAPGP40121 348 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 NME5P56597 212 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 ARF5P84085 180 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 FKBP3Q00688 224 aaKnown RBP2.77□□□□□ -1.97
HMGB1-201ENST00000326004 UBXN1Q04323 297 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 C17orf67Q0P5P2 114 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 MEF2DQ14814 521 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 ZNF146Q15072 292 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 SPHARQ15513 63 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 SGCBQ16585 318 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 TATDN1Q6P1N9 297 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 CDHR3Q6ZTQ4 885 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 RAPH1Q70E73 1250 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 C17orf64Q86WR6 236 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 CACUL1Q86Y37 369 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 OR4N5Q8IXE1 308 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 ZNF485Q8NCK3 441 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 NPRL2Q8WTW4 380 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 LIPHQ8WWY8 451 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 ZNF274Q96GC6 653 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-201ENST00000326004 C5orf30Q96GV9 206 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 PDLIM5Q96HC4 596 aaKnown RBP2.77□□□□□ -1.97
HMGB1-201ENST00000326004 SSX3Q99909 188 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 NUSAP1Q9BXS6 441 aaKnown RBP2.77□□□□□ -1.97
HMGB1-201ENST00000326004 NMUR1Q9HB89 426 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 MID1IP1Q9NPA3 183 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 COMMD8Q9NX08 183 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 PLEK2Q9NYT0 353 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 THAP10Q9P2Z0 257 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-201ENST00000326004 FOXA2Q9Y261 457 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-201ENST00000326004 MOB4Q9Y3A3 225 aa2.77□□□□□ -1.97
HMGB1-201ENST00000326004 TOP2AP11388 1531 aaKnown RBP2.77□□□□□ -1.97
HMGB1-201ENST00000326004 C9orf84Q5VXU9 1444 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 NINLQ9Y2I6 1382 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 CAMTA1Q9Y6Y1 1673 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 IGLV4-3A0A075B6K6 122 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 BCLAF3A2AJT9 711 aaKnown RBP2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms