RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 CHI3L1P36222 383 aaPredicted RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 BDKRB1P46663 353 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 LIM2P55344 173 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 PCDH1Q08174 1060 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 BCDIN3DQ7Z5W3 292 aaKnown RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 DNAJB7Q7Z6W7 309 aaPredicted RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 TAGAPQ8N103 731 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 NATD1Q8N6N6 113 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 YIPF7Q8N8F6 280 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 OR4M1Q8NGD0 313 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 KLHL6Q8WZ60 621 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 TMEM80Q96HE8 168 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 ZDHHC6Q9H6R6 413 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 LRFN2Q9ULH4 789 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 STUB1Q9UNE7 303 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 CMAHPQ9Y471 501 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 SMLR1H3BR10 107 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 GPR37L1O60883 481 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 IFNW1P05000 195 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 TRAPPC2P0DI81 140 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 TRAPPC2BP0DI82 140 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 PRKAR2AP13861 404 aaKnown RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 ITGB7P26010 798 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 KIR2DL3P43628 341 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 PREPP48147 710 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 SNRPGP62308 76 aaKnown RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 RUNX1T1Q06455 604 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 GPNMBQ14956 572 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 LARS2Q15031 903 aaKnown RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 GLYR1Q49A26 553 aaPredicted RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 IER5LQ5T953 404 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 PAQR6Q6TCH4 344 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 COMMD6Q7Z4G1 85 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 GALNT6Q8NCL4 622 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 SLC6A18Q96N87 628 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 ZNF717Q9BY31 904 aaPredicted RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 RC3H2Q9HBD1 1191 aaKnown RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 NDUFB11Q9NX14 153 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 KCND3Q9UK17 655 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 BACE2Q9Y5Z0 518 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 IQCMA0A1B0GVH7 501 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 HYKKA2RU49 373 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 ABLIM3O94929 683 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 CSF3P09919 207 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 CCNYL3P0C7X3 344 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 ARAFP10398 606 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 SCN1BQ07699 218 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 FAPQ12884 760 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 NCF4Q15080 339 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 SEC23BQ15437 767 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 ZDHHC20Q5W0Z9 365 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 FAM131AQ6UXB0 335 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 SLCO4C1Q6ZQN7 724 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 ABI3BPQ7Z7G0 1075 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 RDH10Q8IZV5 341 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 PPCDCQ96CD2 204 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 POLR2J2Q9GZM3 115 aaKnown RBP12.81□□□□□ -0.36
SKA3-202ENST00000314759 SLC22A4Q9H015 551 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 ABCB9Q9NP78 766 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 SNX7Q9UNH6 387 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 SMIM30A4D0T7 59 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 PLD2O14939 933 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 NPC1O15118 1278 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 TPST2O60704 377 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 SEMA7AO75326 666 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 KLHL18O94889 574 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 OSMP13725 252 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 PRKCZQ05513 592 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 C2orf80Q0P641 193 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 VEPH1Q14D04 833 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 LIPKQ5VXJ0 399 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 MED27Q6P2C8 311 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 DPY19L3Q6ZPD9 716 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 TMPRSS11BQ86T26 416 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 BPHLQ86WA6 291 aaPredicted RBP12.81□□□□□ -0.36
SKA3-202ENST00000314759 PHC2Q8IXK0 858 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 NANOGP1Q8N7R0 232 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 ZNF557Q8N988 423 aaPredicted RBP12.81□□□□□ -0.36
SKA3-202ENST00000314759 OR56A3Q8NH54 315 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 WDR48Q8TAF3 677 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 ZFAND1Q8TCF1 268 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 DEDD2Q8WXF8 326 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 REPS1Q96D71 796 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 TMEM175Q9BSA9 504 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 MND1Q9BWT6 205 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 GON7Q9BXV9 100 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 RSPO3Q9BXY4 272 aaPredicted RBP12.81□□□□□ -0.36
SKA3-202ENST00000314759 MIXL1Q9H2W2 232 aa12.81□□□□□ -0.36
SKA3-202ENST00000314759 DNMT3AQ9Y6K1 912 aaPredicted RBP12.81□□□□□ -0.36
SKA3-202ENST00000314759 HELZP42694 1942 aaKnown RBP12.8□□□□□ -0.36
SKA3-202ENST00000314759 CDRT1O95170 752 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 TGFB1P01137 390 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 ALPPP05187 535 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 ELNP15502 786 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 ILKQ13418 452 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 ASAH1Q13510 395 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 PDE7AQ13946 482 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 MEDAGQ5VYS4 303 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 KIAA1841Q6NSI8 718 aa12.8□□□□□ -0.36
SKA3-202ENST00000314759 CCDC149Q6ZUS6 474 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms