RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 IDUAP35475 653 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 RBM34P42696 430 aaKnown RBP18.51■□□□□ 0.55
USP48-201ENST00000308271 ZNF140P52738 457 aaPredicted RBP18.51■□□□□ 0.55
USP48-201ENST00000308271 ATAD3CQ5T2N8 411 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 ING5Q8WYH8 240 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 SMPDL3AQ92484 453 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 ARMC5Q96C12 935 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 OR4K3Q96R72 315 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 BTNL2Q9UIR0 455 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 ASB4Q9Y574 426 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 H2AFB2P0C5Z0 115 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 EDNRAP25101 427 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 EIF2DP41214 584 aaKnown RBP18.51■□□□□ 0.55
USP48-201ENST00000308271 NRARPQ7Z6K4 114 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 SCD5Q86SK9 330 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 NPLOC4Q8TAT6 608 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 TRMT61BQ9BVS5 477 aaKnown RBP18.51■□□□□ 0.55
USP48-201ENST00000308271 CACNG6Q9BXT2 260 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 IL17CQ9P0M4 197 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 PCDHGB2Q9Y5G2 931 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 ZBTB42B2RXF5 422 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 XKRYO14609 159 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 C1GALT1C1LP0DN25 315 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 WDR45BQ5MNZ6 344 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 LYSMD2Q8IV50 215 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 S100A16Q96FQ6 103 aaKnown RBP18.51■□□□□ 0.55
USP48-201ENST00000308271 PAAF1Q9BRP4 392 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 NMNAT1Q9HAN9 279 aaPredicted RBP18.51■□□□□ 0.55
USP48-201ENST00000308271 KLK4Q9Y5K2 254 aa18.51■□□□□ 0.55
USP48-201ENST00000308271 MROH6A6NGR9 719 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 MTNR1AP48039 350 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 PREPP48147 710 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 SNTB2Q13425 540 aaKnown RBP18.5■□□□□ 0.55
USP48-201ENST00000308271 LASP1Q14847 261 aaKnown RBP18.5■□□□□ 0.55
USP48-201ENST00000308271 ARRDC2Q8TBH0 407 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 OVCA2Q8WZ82 227 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 TESCQ96BS2 214 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 RNF31Q96EP0 1072 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 C12orf66Q96MD2 445 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 PCDH10Q9P2E7 1040 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 C2orf92A0A1B0GVN3 265 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 RP2O75695 350 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 TNFRSF1BP20333 461 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 TSC22D1Q15714 1073 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 C22orf39Q6P5X5 142 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 RAB11FIP5Q9BXF6 653 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 SLC12A9Q9BXP2 914 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 HDHD5Q9BXW7 423 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 TAC3Q9UHF0 121 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 CITO14578 2027 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 E2F3O00716 465 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 TRIM3O75382 744 aaPredicted RBP18.5■□□□□ 0.55
USP48-201ENST00000308271 ZNF821O75541 412 aaPredicted RBP18.5■□□□□ 0.55
USP48-201ENST00000308271 WNT4P56705 351 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 OR7G1Q8NGA0 311 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 TMEM40Q8WWA1 233 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 RDH14Q9HBH5 336 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 SLC45A1Q9Y2W3 748 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 H7C2Y5 167 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 SULT1C4O75897 302 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 IL3P08700 152 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 TBPL2Q6SJ96 375 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 BAIAP2L2Q6UXY1 529 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 TMCO2Q7Z6W1 182 aaPredicted RBP18.5■□□□□ 0.55
USP48-201ENST00000308271 CPPED1Q9BRF8 314 aaPredicted RBP18.5■□□□□ 0.55
USP48-201ENST00000308271 BOCQ9BWV1 1114 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 ADAP2Q9NPF8 381 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 STOX2Q9P2F5 926 aaPredicted RBP18.5■□□□□ 0.55
USP48-201ENST00000308271 DEC1Q9P2X7 70 aa18.5■□□□□ 0.55
USP48-201ENST00000308271 OR2AT4A6NND4 320 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 EPCAMP16422 314 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 BMP8BP34820 402 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 SEMA3BQ13214 749 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 BMP8AQ7Z5Y6 402 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 DNAJC22Q8N4W6 341 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 RBM38Q9H0Z9 239 aaKnown RBP18.49■□□□□ 0.55
USP48-201ENST00000308271 MKKSQ9NPJ1 570 aaPredicted RBP18.49■□□□□ 0.55
USP48-201ENST00000308271 TMEM39AQ9NV64 488 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 MGAT4AQ9UM21 535 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 ADAMTS7Q9UKP4 1686 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 LAG3P18627 525 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 DDX6P26196 483 aaKnown RBP eCLIP18.49■□□□□ 0.554e-6■■□□□ 13.7
USP48-201ENST00000308271 Q6ZSR9 355 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 Q6ZVU0 165 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 GPALPP1Q8IXQ4 340 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 SYT17Q9BSW7 474 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 ACPTQ9BZG2 426 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 TRIM2Q9C040 744 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 CSNK1G1Q9HCP0 422 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 ACSL6Q9UKU0 697 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 COLEC10Q9Y6Z7 277 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 SLC35F4A4IF30 521 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 UQCRC1P31930 480 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 GKP32189 559 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 GRK6P43250 576 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 EIF5AP63241 154 aaKnown RBP18.49■□□□□ 0.55
USP48-201ENST00000308271 SPRYD7Q5W111 196 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 CNIH2Q6PI25 160 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 DLK2Q6UY11 383 aa18.49■□□□□ 0.55
USP48-201ENST00000308271 TAF8Q7Z7C8 310 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms