RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 VITQ6UXI7 678 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 JAGN1Q8N5M9 183 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 SLC5A8Q8N695 610 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 ARFGAP1Q8N6T3 406 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 CAMKVQ8NCB2 501 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 OVCA2Q8WZ82 227 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 EPYCQ99645 322 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 TMEM175Q9BSA9 504 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 ZNF350Q9GZX5 532 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 PCDH10Q9P2E7 1040 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 FBXO9Q9UK97 447 aaPredicted RBP12.34□□□□□ -0.43
COL3A1-201ENST00000304636 PCDHGB2Q9Y5G2 931 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 C13orf42A0A1B0GVH6 325 aa12.33□□□□□ -0.43
COL3A1-201ENST00000304636 RBBP9O75884 186 aa12.33□□□□□ -0.43
COL3A1-201ENST00000304636 C1GALT1C1LP0DN25 315 aa12.33□□□□□ -0.43
COL3A1-201ENST00000304636 CLCNKAP51800 687 aa12.33□□□□□ -0.43
COL3A1-201ENST00000304636 DCP2Q8IU60 420 aaKnown RBP12.33□□□□□ -0.43
COL3A1-201ENST00000304636 SLC7A5P1Q8MH63 180 aa12.33□□□□□ -0.43
COL3A1-201ENST00000304636 XKR8Q9H6D3 395 aa12.33□□□□□ -0.43
COL3A1-201ENST00000304636 F2P00734 622 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 ELNP15502 786 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 GRK5P34947 590 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 FNTBP49356 437 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 CXCR4P61073 352 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 C11orf91Q3C1V1 193 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 OR6Q1Q8NGQ2 317 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 TMEM174Q8WUU8 243 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 IGSF8Q969P0 613 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 GORASP2Q9H8Y8 452 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 MGAT4CQ9UBM8 478 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 SH2B3Q9UQQ2 575 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 A0A1W2PQL4 384 aaPredicted RBP12.33□□□□□ -0.44
COL3A1-201ENST00000304636 VILLO15195 856 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 OR12D1P0DN82 309 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 ITGAMP11215 1152 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 TCEA1P23193 301 aaKnown RBP12.33□□□□□ -0.44
COL3A1-201ENST00000304636 CRHBPP24387 322 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 PREPP48147 710 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 C1orf189Q5VU69 101 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 ANKRD54Q6NXT1 300 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 DNM1P34Q6PK57 102 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 GET4Q7L5D6 327 aaPredicted RBP12.33□□□□□ -0.44
COL3A1-201ENST00000304636 PGAP3Q96FM1 320 aaPredicted RBP12.33□□□□□ -0.44
COL3A1-201ENST00000304636 DCAF13Q9NV06 445 aaKnown RBP12.33□□□□□ -0.44
COL3A1-201ENST00000304636 LRRTM2O43300 516 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 HNF1BP35680 557 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 MAD2L1BPQ15013 274 aaPredicted RBP12.33□□□□□ -0.44
COL3A1-201ENST00000304636 SNAP47Q5SQN1 464 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 PM20D1Q6GTS8 502 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 FBXO15Q8NCQ5 510 aaPredicted RBP12.33□□□□□ -0.44
COL3A1-201ENST00000304636 KREMEN2Q8NCW0 462 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 C7orf57Q8NEG2 295 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 DBF4BQ8NFT6 615 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 THEM6Q8WUY1 208 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 PTERQ96BW5 349 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 CHFRQ96EP1 664 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 HSPA12BQ96MM6 686 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 B4GALT6Q9UBX8 382 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 MTMR11A4FU01 709 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 CD8B2A6NJW9 211 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 LYRM1O43325 122 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 CD8BP10966 210 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 LHCGRP22888 699 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 UPP1Q16831 310 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 MICAQ29983 383 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 MMAAQ8IVH4 418 aaKnown RBP12.33□□□□□ -0.44
COL3A1-201ENST00000304636 SLC22A15Q8IZD6 547 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 KCT2Q8NC54 265 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 ASB12Q8WXK4 309 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 PLEKHA6Q9Y2H5 1048 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 PCDHGA8Q9Y5G5 932 aa12.33□□□□□ -0.44
COL3A1-201ENST00000304636 HTR6P50406 440 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 CTBP2P56545 445 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 S100A10P60903 97 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 TMEM69Q5SWH9 247 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 SPRYD7Q5W111 196 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 SUSD1Q6UWL2 747 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 OR2L2Q8NH16 312 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 METTL21AQ8WXB1 218 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 SLC25A36Q96CQ1 311 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 FARSAQ9Y285 508 aaKnown RBP12.32□□□□□ -0.44
COL3A1-201ENST00000304636 ASB4Q9Y574 426 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 IGKV6-21A0A0C4DH24 114 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 ARNTLO00327 626 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 B4GAT1O43505 415 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 TOXO94900 526 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 CRYZL1O95825 349 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 GKN3PP0CG01 181 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 C8orf89P0DMQ9 161 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 CD9P21926 228 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 EMX1Q04741 257 aaPredicted RBP12.32□□□□□ -0.44
COL3A1-201ENST00000304636 RBM23Q86U06 439 aaKnown RBP12.32□□□□□ -0.44
COL3A1-201ENST00000304636 ZNF101Q8IZC7 436 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 SLC44A3Q8N4M1 653 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 OR5T3Q8NGG3 340 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 GPR150Q8NGU9 434 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 RIT1Q92963 219 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 CACNG6Q9BXT2 260 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 ACOT13Q9NPJ3 140 aa12.32□□□□□ -0.44
COL3A1-201ENST00000304636 SARDHQ9UL12 918 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms