RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 C10orf120Q5SQS8 335 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 SH3PXD2AQ5TCZ1 1133 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 TRNP1Q6NT89 227 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 COX15Q7KZN9 410 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 C14orf80Q86SX3 495 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 RALGPS2Q86X27 583 aaPredicted RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 VWA5B2Q8N398 1253 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 NAXEQ8NCW5 288 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 CAMK1GQ96NX5 476 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 C14orf105Q9NVL8 296 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 BTNL2Q9UIR0 455 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 SLC19A2O60779 497 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 LILRB5O75023 590 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 ARRB2P32121 409 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 BTG1P62324 171 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 JAG1P78504 1218 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 CHRNA6Q15825 494 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 VAMP3Q15836 100 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 PPP2R2DQ66LE6 453 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 SMARCD3Q6STE5 483 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 DPY19L3Q6ZPD9 716 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 KANSL1Q7Z3B3 1105 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 SKA3Q8IX90 412 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 FAM109AQ8N4B1 249 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 FAM160A2Q8N612 972 aaPredicted RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 OR8J1Q8NGP2 316 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 SELENOMQ8WWX9 145 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 NSMAFQ92636 917 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 FCRL2Q96LA5 508 aaPredicted RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 OR52E6Q96RD3 313 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 LMAN2LQ9H0V9 348 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 LIN28AQ9H9Z2 209 aaKnown RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 NT5MQ9NPB1 228 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 IL1RAPQ9NPH3 570 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 POLHQ9Y253 713 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 H7C4K7 107 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 AGPAT2O15120 278 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 B4GALT5O43286 388 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 HOXA2O43364 376 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 TPST2O60704 377 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 NAT1P18440 290 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 CD68P34810 354 aaPredicted RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 CD86P42081 329 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 CAMLGP49069 296 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 CASP9P55211 416 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 FCGRTP55899 365 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 ACSM2AQ08AH3 577 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 TMEM41BQ5BJD5 291 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 ACSM2BQ68CK6 577 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 KIAA1211LQ6NV74 962 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 CACUL1Q86Y37 369 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 GPRC5AQ8NFJ5 357 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 GPR156Q8NFN8 814 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 NLGN2Q8NFZ4 835 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 MITD1Q8WV92 249 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 MRI1Q9BV20 369 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 LGR4Q9BXB1 951 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 OR10A4Q9H209 315 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 FN3KRPQ9HA64 309 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 ACOT13Q9NPJ3 140 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 OSGIN1Q9UJX0 560 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 ZNF175Q9Y473 711 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 OR10H1Q9Y4A9 318 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 RBBP6Q7Z6E9 1792 aaKnown RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 XPNPEP2O43895 674 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 KAT7O95251 611 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 RAB6AP20340 208 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 IDUAP35475 653 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 RPL13AP40429 203 aaKnown RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 MC2RQ01718 297 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 MFSD13AQ14CX5 517 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 LARS2Q15031 903 aaKnown RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 POU4F3Q15319 338 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 GPR68Q15743 365 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 NDUFAF5Q5TEU4 345 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 USP50Q70EL3 339 aaPredicted RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 TMPRSS7Q7RTY8 843 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 CADM3Q8N126 398 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 LIX1Q8N485 282 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 PBDC1Q9BVG4 233 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 SERTAD4Q9NUC0 356 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 GULP1Q9UBP9 304 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 FBXL21Q9UKT6 434 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 NDRG4Q9ULP0 352 aaKnown RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 MGAT4BQ9UQ53 548 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 MED31Q9Y3C7 131 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 BORCS7-ASMTA0A0B4J1R7 106 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 A8MX80 341 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 ZNF623O75123 536 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 CLDN9O95484 217 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 MT-ND2P03891 347 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 HNF1AP20823 631 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 GBX2P52951 348 aaPredicted RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 WNT7BP56706 349 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 RPL38P63173 70 aaKnown RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 ZNHIT3Q15649 155 aaPredicted RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 PTPRNQ16849 979 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 TAC4Q86UU9 113 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 PHYKPLQ8IUZ5 450 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 CCDC116Q8IYX3 515 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms