RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 GET4Q7L5D6 327 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 MALSU1Q96EH3 234 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 NMUR1Q9HB89 426 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 HMX1Q9NP08 348 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 PNO1Q9NRX1 252 aaKnown RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 DOCK1Q14185 1865 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 F5P12259 2224 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 HMX3A6NHT5 357 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 AIPO00170 330 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 SCDO00767 359 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 CFL1P23528 166 aaKnown RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 ELK4P28324 431 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 MAP2K3P46734 347 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 DYRK1AQ13627 763 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 GPR33Q49SQ1 333 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 TMCO2Q7Z6W1 182 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 SCML4Q8N228 414 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 TTLQ8NG68 377 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 ZNF701Q9NV72 531 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 A0A1W2PPW3 197 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 SH3PXD2BA1X283 911 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 RFPL2O75678 378 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 AGR2O95994 175 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 JUNP05412 331 aaKnown RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 CD97P48960 835 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 OR9I1Q8NGQ6 314 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 ARL11Q969Q4 196 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 EPYCQ99645 322 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 SRMSQ9H3Y6 488 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 PRKACBP22694 351 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 ZDHHC14Q8IZN3 488 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 NLE1Q9NVX2 485 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 MPDZO75970 2070 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 GXYLT2A0PJZ3 443 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 PAK4O96013 591 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 AMY2BP19961 511 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 SLC26A5P58743 744 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 TMEM135Q86UB9 458 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 TERB2Q8NHR7 220 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 CPT1CQ8TCG5 803 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 ITM2CQ9NQX7 267 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 CLCA3PQ9Y6N3 262 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 RBBP6Q7Z6E9 1792 aaKnown RBP9.49□□□□□ -0.89
COL6A3-201ENST00000295550 COL16A1Q07092 1604 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-201ENST00000295550 EIF1AXP47813 144 aaKnown RBP9.49□□□□□ -0.89
COL6A3-201ENST00000295550 NAPRTQ6XQN6 538 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 BIRC7Q96CA5 298 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 PYURFQ96I23 114 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 TEPSINQ96N21 525 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 ATG5Q9H1Y0 275 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 RNF39Q9H2S5 420 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 TP63Q9H3D4 680 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-201ENST00000295550 FN3KQ9H479 309 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 COPZ2Q9P299 210 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 ABI3Q9P2A4 366 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 PCDHGC4Q9Y5F7 938 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 AHCTF1Q8WYP5 2266 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 FLRT2O43155 660 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 OPN1SWP03999 348 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 EDNRBP24530 442 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 PRKXP51817 358 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 SPRYD7Q5W111 196 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 KANK2Q63ZY3 851 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 ELP2Q6IA86 826 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 GID4Q8IVV7 300 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 TMEM199Q8N511 208 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 RHEBL1Q8TAI7 183 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 TTTY10Q9BZA0 68 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 RPF2Q9H7B2 306 aaKnown RBP9.49□□□□□ -0.89
COL6A3-201ENST00000295550 SEC61A2Q9H9S3 476 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 RRAGCQ9HB90 399 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 SACM1LQ9NTJ5 587 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 KCNJ13O60928 360 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 SIX3O95343 332 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-201ENST00000295550 OXSR1O95747 527 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-201ENST00000295550 GSTM2P28161 218 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 CEACAM20Q6UY09 585 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 OR56A1Q8NGH5 318 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 ZNF675Q8TD23 568 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 DEDD2Q8WXF8 326 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 C1orf74Q96LT6 269 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 TCEAL7Q9BRU2 100 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 OR2S2Q9NQN1 319 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 FCF1Q9Y324 198 aaKnown RBP9.49□□□□□ -0.89
COL6A3-201ENST00000295550 NDUFS4O43181 175 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 ZNF182P17025 639 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-201ENST00000295550 NUDT13Q86X67 352 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 RETREG1Q9H6L5 497 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 IGKV6-21A0A0C4DH24 114 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 NR2C1P13056 603 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 ADH7P40394 386 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 GABARAPL2P60520 117 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 ZNF767PQ75MW2 155 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 OR10Q1Q8NGQ4 319 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 SLC45A3Q96JT2 553 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 CADP27708 2225 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 POP4O95707 220 aaKnown RBP9.49□□□□□ -0.89
COL6A3-201ENST00000295550 KBTBD6Q86V97 674 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 MAN2C1Q9NTJ4 1040 aa9.49□□□□□ -0.89
COL6A3-201ENST00000295550 COQ3Q9NZJ6 369 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms