RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 AGFG1P52594 562 aaKnown RBP13.71□□□□□ -0.21
SDC1-201ENST00000254351 ZNF177Q13360 481 aaPredicted RBP13.71□□□□□ -0.21
SDC1-201ENST00000254351 FAM110CQ1W6H9 321 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 TNFAIP8L2Q6P589 184 aaPredicted RBP13.71□□□□□ -0.21
SDC1-201ENST00000254351 CXCL17Q6UXB2 119 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 TCTE3Q8IZS6 198 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 FAM46DQ8NEK8 389 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 CMTM7Q96FZ5 175 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 MAPRE3Q9UPY8 281 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 SCML2Q9UQR0 700 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 PADI2Q9Y2J8 665 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 MRPS7Q9Y2R9 242 aaKnown RBP13.71□□□□□ -0.21
SDC1-201ENST00000254351 CD8B2A6NJW9 211 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 HRO43593 1189 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 SLC22A5O76082 557 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 CD8BP10966 210 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 PRKACAP17612 351 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 MAPK1P28482 360 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 ABRQ12979 859 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 SEC23BQ15437 767 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 CCL14Q16627 93 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 ZSWIM7Q19AV6 140 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 BRAT1Q6PJG6 821 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 GPR142Q7Z601 462 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 ZNF680Q8NEM1 530 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 OR11H4Q8NGC9 324 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 C9orf43Q8TAL5 461 aaPredicted RBP13.71□□□□□ -0.21
SDC1-201ENST00000254351 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.71□□□□□ -0.21
SDC1-201ENST00000254351 TM9SF4Q92544 642 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 RAB8BQ92930 207 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 KCTD7Q96MP8 289 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 VPS29Q9UBQ0 182 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 PIPSLA2A3N6 862 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 E7EQ34 232 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 SEPT4O43236 478 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 LANCL1O43813 399 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 CH25HO95992 272 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 GSTM1P09488 218 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 GJA1P17302 382 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 CD22P20273 847 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 ITGALP20701 1170 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 CCR7P32248 378 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 THPOP40225 353 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 MEF2AQ02078 507 aaPredicted RBP13.7□□□□□ -0.22
SDC1-201ENST00000254351 DOC2AQ14183 400 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 ZNF385BQ569K4 471 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 ZBTB37Q5TC79 503 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 MZT2BQ6NZ67 158 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 SERPINA13PQ6UXR4 307 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 USP45Q70EL2 814 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 CREB3L2Q70SY1 520 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 ZNF767PQ75MW2 155 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 LAPTM4BQ86VI4 370 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 TRIM69Q86WT6 500 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 NPAS3Q8IXF0 933 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 C9orf62Q8N4C0 152 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 TBC1D20Q96BZ9 403 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 WFDC6Q9BQY6 131 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 MND1Q9BWT6 205 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 C1QTNF7Q9BXJ2 289 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 MRPL9Q9BYD2 267 aaKnown RBP13.7□□□□□ -0.22
SDC1-201ENST00000254351 MED28Q9H204 178 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 RBFOX1Q9NWB1 397 aaKnown RBP13.7□□□□□ -0.22
SDC1-201ENST00000254351 NKIRAS2Q9NYR9 191 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 IL20RAQ9UHF4 553 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 A0A0A6YYJ9 748 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 ORC5O43913 435 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 ALDH1A1P00352 501 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 CXCL3P19876 107 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 PTGER1P34995 402 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 SRSF11Q05519 484 aaKnown RBP13.7□□□□□ -0.22
SDC1-201ENST00000254351 DUSP4Q13115 394 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 CLEC12AQ5QGZ9 265 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 OR4C15Q8NGM1 316 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 AKAP1Q92667 903 aaKnown RBP eCLIP13.7□□□□□ -0.223e-10■■■■□ 22.1
SDC1-201ENST00000254351 LRR1Q96L50 414 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 SLC6A18Q96N87 628 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 SAMD11Q96NU1 681 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 MS4A7Q9GZW8 240 aaPredicted RBP13.7□□□□□ -0.22
SDC1-201ENST00000254351 SLAMF7Q9NQ25 335 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 ZNF624Q9P2J8 865 aaPredicted RBP13.7□□□□□ -0.22
SDC1-201ENST00000254351 DRGXA6NNA5 263 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 POM121CA8CG34 1229 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 PRKYO43930 277 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 TYMPP19971 482 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 RPL9P32969 192 aaKnown RBP13.7□□□□□ -0.22
SDC1-201ENST00000254351 ABATP80404 500 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 ARF5P84085 180 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 MGAT3Q09327 533 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 SLC5A12Q1EHB4 618 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 GPRC6AQ5T6X5 926 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 GDPD1Q8N9F7 314 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 ZBTB44Q8NCP5 570 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 VPS37AQ8NEZ2 397 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 PIP5K1AQ99755 562 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 SLC7A5P2Q9GIP4 190 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 FBXO44Q9H4M3 255 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 NUDT15Q9NV35 164 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 PADI3Q9ULW8 664 aa13.7□□□□□ -0.22
SDC1-201ENST00000254351 PPIEQ9UNP9 301 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms