RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 C13orf42A0A1B0GVH6 325 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 TTC34A8MYJ7 566 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 OAZ2O95190 189 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 ERP29P30040 261 aaKnown RBP13.02□□□□□ -0.33
SF3A1-201ENST00000215793 PLP2Q04941 152 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 ODF4Q2M2E3 257 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 TMEM35AQ53FP2 167 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 FAM76BQ5HYJ3 339 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 CATSPEREQ5SY80 951 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 C15orf39Q6ZRI6 1047 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 CDHR3Q6ZTQ4 885 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 FOXRED2Q8IWF2 684 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 TESCQ96BS2 214 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 CCDC120Q96HB5 630 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 GLS2Q9UI32 602 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 CACNA1FO60840 1977 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 ISPDA4D126 451 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 SCGB1D2O95969 90 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 HEXBP07686 556 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 ZNF182P17025 639 aaPredicted RBP13.02□□□□□ -0.33
SF3A1-201ENST00000215793 GPR143P51810 404 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 CLDN8P56748 225 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 PSMA6P60900 246 aaKnown RBP13.02□□□□□ -0.33
SF3A1-201ENST00000215793 MLLT1Q03111 559 aaPredicted RBP13.02□□□□□ -0.33
SF3A1-201ENST00000215793 GRM2Q14416 872 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 TMEM225Q6GV28 225 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 XKR8Q9H6D3 395 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 LIN28AQ9H9Z2 209 aaKnown RBP13.02□□□□□ -0.33
SF3A1-201ENST00000215793 TREM1Q9NP99 234 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 PCDH10Q9P2E7 1040 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 PLCL2Q9UPR0 1127 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 C10orf71Q711Q0 1435 aa13.02□□□□□ -0.33
SF3A1-201ENST00000215793 HCRTR2O43614 444 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 RHCEP18577 417 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 LCN1P31025 176 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 GABRA3P34903 492 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 STK19P49842 368 aaPredicted RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 CLCN2P51788 898 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 VSX2P58304 361 aaPredicted RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 GALNT12Q8IXK2 581 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 KRTCAP2Q8N6L1 136 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 SAMD12Q8N8I0 201 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 ZFAND2BQ8WV99 257 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 ZNF471Q9BX82 626 aaPredicted RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 MROQ9BYG7 248 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 GPR62Q9BZJ7 368 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 TIGARQ9NQ88 270 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 EXTL2Q9UBQ6 330 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 HSPB11Q9Y547 144 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 BACE2Q9Y5Z0 518 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 EIF3FO00303 357 aaPredicted RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 SLC33A1O00400 549 aaPredicted RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 APBB3O95704 486 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 OXSR1O95747 527 aaPredicted RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 FDXRP22570 491 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 EIF2S3P41091 472 aaKnown RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 TBPL1P62380 186 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 SOX4Q06945 474 aaPredicted RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 DOC2AQ14183 400 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 CYP27C1Q4G0S4 372 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 HSD17B12Q53GQ0 312 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 OR56A3Q8NH54 315 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 MAGIXQ9H6Y5 334 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 STC2O76061 302 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 BEST1O76090 585 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 MT-ND2P03891 347 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 SLC9A3P48764 834 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 SLC10A2Q12908 348 aaPredicted RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 SLAMF1Q13291 335 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 UGT3A2Q3SY77 523 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 KIAA0319Q5VV43 1072 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 XKRXQ6PP77 449 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 MARVELD2Q8N4S9 558 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 FCAMRQ8WWV6 532 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 DAZLQ92904 295 aaKnown RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 SECISBP2Q96T21 854 aaKnown RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 SMURF1Q9HCE7 757 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 SH3PXD2BA1X283 911 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 ZNF860A6NHJ4 632 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 RNH1P13489 461 aaKnown RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 ELK4P28324 431 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 MECP2P51608 486 aaKnown RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 CDK10Q15131 360 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 OR52E8Q6IFG1 317 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 PSAPL1Q6NUJ1 521 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 ZNF283Q8N7M2 679 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 AKAP1Q92667 903 aaKnown RBP eCLIP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 LDAHQ9H6V9 325 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 TMEM184CQ9NVA4 438 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 FARSAQ9Y285 508 aaKnown RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 HSPE1-MOB4S4R3N1 261 aa13.01□□□□□ -0.33
SF3A1-201ENST00000215793 AFDNP55196 1824 aaKnown RBP13.01□□□□□ -0.33
SF3A1-201ENST00000215793 ANKRD26Q9UPS8 1709 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 I3L521 148 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 VNN2O95498 520 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 S100A2P29034 98 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 RBMXP38159 391 aaKnown RBP13□□□□□ -0.33
SF3A1-201ENST00000215793 CRISP1P54107 249 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 EXOC3L2Q2M3D2 409 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 PLEKHN1Q494U1 663 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms