RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 C6orf136Q5SQH8 315 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 PAPD4Q6PIY7 484 aaKnown RBP10.05□□□□□ -0.8
VCL-201ENST00000211998 OR7D4Q8NG98 312 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 HERVK_113Q902F9 699 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 YIPF4Q9BSR8 244 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 C11orf84Q9BUA3 381 aaPredicted RBP10.05□□□□□ -0.8
VCL-201ENST00000211998 FZD8Q9H461 694 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 DPEP3Q9H4B8 488 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 POLMQ9NP87 494 aaPredicted RBP10.05□□□□□ -0.8
VCL-201ENST00000211998 P2RX2Q9UBL9 471 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 SOBPA7XYQ1 873 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 J3KR12 359 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 TOR1AO14656 332 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 PRAMEF2O60811 474 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 CDK1P06493 297 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 DDX6P26196 483 aaKnown RBP eCLIP10.05□□□□□ -0.84e-7■□□□□ 9.5
VCL-201ENST00000211998 HSD17B2P37059 387 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 SCNN1AP37088 669 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 ODF4Q2M2E3 257 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 EIPR1Q53HC9 387 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 LINGO4Q6UY18 593 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 ZNF101Q8IZC7 436 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 CELF2-AS1Q8N7Q2 184 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 LCN9Q8WX39 176 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 ZNF514Q96K75 400 aaPredicted RBP10.05□□□□□ -0.8
VCL-201ENST00000211998 CAPNS2Q96L46 248 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 BCAS3Q9H6U6 928 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 FBXW2Q9UKT8 454 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 F5H5P2 479 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 RGS9O75916 674 aaPredicted RBP10.05□□□□□ -0.8
VCL-201ENST00000211998 BCKDHAP12694 445 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 ZNF823P16415 610 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 PIK3CBP42338 1070 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 METTL11BQ5VVY1 283 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 STEAP3Q658P3 488 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 FAM83FQ8NEG4 500 aaPredicted RBP10.05□□□□□ -0.8
VCL-201ENST00000211998 CLEC4CQ8WTT0 213 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 ST8SIA2Q92186 375 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 PYCR2Q96C36 320 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 ZNF599Q96NL3 588 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 NECAB3Q96P71 396 aaPredicted RBP10.05□□□□□ -0.8
VCL-201ENST00000211998 NTPCRQ9BSD7 190 aaKnown RBP10.05□□□□□ -0.8
VCL-201ENST00000211998 MFFQ9GZY8 342 aa10.05□□□□□ -0.8
VCL-201ENST00000211998 RHPN2P1A8MT19 583 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 BHMG1C9JSJ3 638 aaPredicted RBP10.04□□□□□ -0.8
VCL-201ENST00000211998 EIF3FO00303 357 aaPredicted RBP10.04□□□□□ -0.8
VCL-201ENST00000211998 AKT2P31751 481 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 MECP2P51608 486 aaKnown RBP10.04□□□□□ -0.8
VCL-201ENST00000211998 CRISP1P54107 249 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 PAN3Q58A45 887 aaKnown RBP10.04□□□□□ -0.8
VCL-201ENST00000211998 BLOC1S3Q6QNY0 202 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 NAPRTQ6XQN6 538 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 NTAN1Q96AB6 310 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 TXNDC15Q96J42 360 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 REEP4Q9H6H4 257 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 MAGIXQ9H6Y5 334 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 ELOVL2Q9NXB9 296 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 FNIP2Q9P278 1114 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 RCBTB2O95199 551 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 MATN4O95460 622 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 MAPK3P27361 379 aaPredicted RBP10.04□□□□□ -0.8
VCL-201ENST00000211998 TNFSF8P32971 234 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 ETV4P43268 484 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 CAMLGP49069 296 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 ZNF33BQ06732 778 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 TRAM1Q15629 374 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 ZNF630Q2M218 657 aaPredicted RBP10.04□□□□□ -0.8
VCL-201ENST00000211998 C14orf28Q4W4Y0 310 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 PGM2L1Q6PCE3 622 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 OR2M4Q96R27 311 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 SLC6A7Q99884 636 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 PTPN18Q99952 460 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 TGIF2Q9GZN2 237 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 ZCCHC3Q9NUD5 404 aaKnown RBP10.04□□□□□ -0.8
VCL-201ENST00000211998 FAM120CQ9NX05 1096 aaKnown RBP10.04□□□□□ -0.8
VCL-201ENST00000211998 MOCS1Q9NZB8 636 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 OR6C2Q9NZP2 312 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 PTGDR2Q9Y5Y4 395 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 LOC730098B7Z3J9 87 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 ZNF670-ZNF695F2Z2N8 137 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 ADAMTS3O15072 1205 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 AGPAT2O15120 278 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 GGT1P19440 569 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 DDCP20711 480 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 TGM4P49221 684 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 BLKP51451 505 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 TCEAL1Q15170 157 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 CEACAM20Q6UY09 585 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 CCDC71Q8IV32 467 aaPredicted RBP10.04□□□□□ -0.8
VCL-201ENST00000211998 ARL14Q8N4G2 192 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 ARL14EPQ8N8R7 260 aaPredicted RBP10.04□□□□□ -0.8
VCL-201ENST00000211998 KREMEN2Q8NCW0 462 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 RBPMSQ93062 196 aaKnown RBP10.04□□□□□ -0.8
VCL-201ENST00000211998 PSMG2Q969U7 264 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 FCF1Q9Y324 198 aaKnown RBP10.04□□□□□ -0.8
VCL-201ENST00000211998 WDR45Q9Y484 360 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 TRAPPC13A5PLN9 417 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 OR2AG2A6NM03 316 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 IRAK2O43187 625 aa10.04□□□□□ -0.8
VCL-201ENST00000211998 SLC34A2O95436 690 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms