RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 GCLMP48507 274 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TUBP50607 506 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RPS16P62249 146 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CRTC2Q53ET0 693 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 IL23RQ5VWK5 629 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PLPP4Q5VZY2 271 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SSX7Q7RTT5 188 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 LINC00471Q8N535 108 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF433Q8N7K0 673 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 OR56A4Q8NGH8 313 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 DNAJB14Q8TBM8 379 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SLC2A12Q8TD20 617 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TSPEARQ8WU66 669 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FKRPQ9H9S5 495 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 EDA2RQ9HAV5 297 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SCPEP1Q9HB40 452 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SGK2Q9HBY8 427 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ASTN2O75129 1339 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CYP3A7-CYP3A51PA0A087WV96 503 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CYB561D2O14569 222 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PI15O43692 258 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CYP3A7P24462 503 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CDC25AP30304 524 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SUOXP51687 545 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RPS21P63220 83 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 MFSD13AQ14CX5 517 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 LYSMD4Q5XG99 296 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SSX9Q7RTT3 188 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF598Q86UK7 904 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SERINC5Q86VE9 423 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 C11orf65Q8NCR3 313 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 REPS2Q8NFH8 660 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 OR52J3Q8NH60 311 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 DNAJB8Q8NHS0 232 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CPT1BQ92523 772 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CAPNS2Q96L46 248 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 KCTD15Q96SI1 283 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 GINS3Q9BRX5 216 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 DPAGT1Q9H3H5 408 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CHST11Q9NPF2 352 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PKIGQ9Y2B9 76 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RUSC2Q8N2Y8 1516 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 LOC105378220A0A1B0GUY1 285 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 OR6C6A6NF89 314 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF785A8K8V0 405 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 IL2RAP01589 272 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SBK2P0C263 348 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 LINGO3P0C6S8 592 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TIE1P35590 1138 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 VEGFCP49767 419 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CDK9P50750 372 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FABP6P51161 128 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SERTAD2Q14140 314 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 DECR1Q16698 335 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PCK2Q16822 640 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF423Q2M1K9 1284 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CRY2Q49AN0 593 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 BPHLQ86WA6 291 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 MIB1Q86YT6 1006 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PIAS4Q8N2W9 510 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SLC43A2Q8N370 569 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TOP6BLQ8N6T0 577 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 LINC00301Q8NCQ3 95 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 STEAP2Q8NFT2 490 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 OR10A6Q8NH74 314 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SPATA20Q8TB22 786 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 HDAC10Q969S8 669 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 GNRHR2Q96P88 292 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TM9SF2Q99805 663 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 GAL3ST1Q99999 423 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ARPC5LQ9BPX5 153 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 HEPHQ9BQS7 1158 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 REEP2Q9BRK0 252 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 NDFIP1Q9BT67 221 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 G6PC3Q9BUM1 346 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM117Q9H0C3 514 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 Q9N2J8 555 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PNPLA7Q6ZV29 1317 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 IFT172Q9UG01 1749 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 LRP5LA4QPB2 252 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SUV39H1O43463 412 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 B3GALT2O43825 422 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF254O75437 659 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CT45A6P0DMU7 189 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CT45A5P0DMU8 189 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CT45A7P0DMV0 189 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CT45A8P0DMV1 189 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CT45A9P0DMV2 189 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CHATP28329 748 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ADRA1BP35368 520 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CTSOP43234 321 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 BIDP55957 195 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 IL10RAQ13651 578 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NR0B2Q15466 257 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PDK4Q16654 411 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 EXOC3L2Q2M3D2 409 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 FLYWCH1Q4VC44 716 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CT45A2Q5DJT8 189 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MTX3Q5HYI7 312 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CT45A1Q5HYN5 189 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms