RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PCBP4P57723 403 aaKnown RBP17.43■□□□□ 0.38
CLN3-254ENST00000637050 HBA1P69905 142 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 DAB2P98082 770 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 SNAP47Q5SQN1 464 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 C18orf63Q68DL7 685 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 ZNF574Q6ZN55 896 aaPredicted RBP17.43■□□□□ 0.38
CLN3-254ENST00000637050 TMPRSS9Q7Z410 1059 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 IFI44Q8TCB0 444 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 EXOSC8Q96B26 276 aaKnown RBP17.43■□□□□ 0.38
CLN3-254ENST00000637050 ALG2Q9H553 416 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 ZNF768Q9H5H4 540 aaKnown RBP17.43■□□□□ 0.38
CLN3-254ENST00000637050 C5AR2Q9P296 337 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 CES1P1Q9UKY3 287 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 ATXN7L1Q9ULK2 861 aaPredicted RBP17.43■□□□□ 0.38
CLN3-254ENST00000637050 AP3M1Q9Y2T2 418 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 NAALAD2Q9Y3Q0 740 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 GMEB1Q9Y692 573 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 CROCCQ5TZA2 2017 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 FITM1A5D6W6 292 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 PDPK1O15530 556 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 PRKRAO75569 313 aaKnown RBP17.42■□□□□ 0.38
CLN3-254ENST00000637050 BCAS2O75934 225 aaPredicted RBP17.42■□□□□ 0.38
CLN3-254ENST00000637050 C6orf47O95873 294 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 MSL3P1P0C860 447 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 NELFEP18615 380 aaKnown RBP17.42■□□□□ 0.38
CLN3-254ENST00000637050 GRK6P43250 576 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 ARL4DP49703 201 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 TNFRSF17Q02223 184 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 TRAP1Q12931 704 aaKnown RBP17.42■□□□□ 0.38
CLN3-254ENST00000637050 KCNAB1Q14722 419 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 NDUFA9Q16795 377 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 INAVAQ3KP66 663 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 GARNL3Q5VVW2 1013 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 SLC48A1Q6P1K1 146 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 ZNF621Q6ZSS3 439 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 SUMF1Q8NBK3 374 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 OR4A15Q8NGL6 344 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 AURKBQ96GD4 344 aaPredicted RBP17.42■□□□□ 0.38
CLN3-254ENST00000637050 C10orf90Q96M02 699 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 DPYSL5Q9BPU6 564 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 THUMPD3Q9BV44 507 aaKnown RBP17.42■□□□□ 0.38
CLN3-254ENST00000637050 NPLQ9BXD5 320 aaPredicted RBP17.42■□□□□ 0.38
CLN3-254ENST00000637050 SLAMF7Q9NQ25 335 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 MS4A12Q9NXJ0 267 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 VPS4AQ9UN37 437 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 PCDHGB4Q9UN71 923 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 ZNF318Q5VUA4 2279 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 H3BMH7 237 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 PGRMC2O15173 223 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 DNAJB6O75190 326 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 MED26O95402 600 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 ATP6V1G2O95670 118 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 ANKRD34CP0C6C1 535 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 ZNF806P0C7X5 589 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 NR2F6P10588 404 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 BUD31P41223 144 aaPredicted RBP17.42■□□□□ 0.38
CLN3-254ENST00000637050 EMP3P54852 163 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 BNIP2Q12982 314 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 CCNIQ14094 377 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 FAM53BQ14153 422 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 FLOT2Q14254 428 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 CLPPQ16740 277 aaPredicted RBP17.42■□□□□ 0.38
CLN3-254ENST00000637050 OR4D9Q8NGE8 314 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 N4BP2L2Q92802 583 aaPredicted RBP17.42■□□□□ 0.38
CLN3-254ENST00000637050 ZNF583Q96ND8 569 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 TRIM4Q9C037 500 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 PCDHAC1Q9H158 963 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 KAT8Q9H7Z6 458 aaKnown RBP17.42■□□□□ 0.38
CLN3-254ENST00000637050 ANKHQ9HCJ1 492 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 SLC35C2Q9NQQ7 365 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 PRDM9Q9NQV7 894 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 ACSS1Q9NUB1 689 aaPredicted RBP17.42■□□□□ 0.38
CLN3-254ENST00000637050 TAS2R9Q9NYW1 312 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 ZNF282Q9UDV7 671 aaPredicted RBP17.42■□□□□ 0.38
CLN3-254ENST00000637050 UTS2RQ9UKP6 389 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 RP1P56715 2156 aa17.42■□□□□ 0.38
CLN3-254ENST00000637050 HYKKA2RU49 373 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 ZNF860A6NHJ4 632 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 GLOD5A6NK44 160 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 WASHC1A8K0Z3 465 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 A8MU76 341 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 CLIC1O00299 241 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 NVLO15381 856 aaKnown RBP17.41■□□□□ 0.38
CLN3-254ENST00000637050 FLRT2O43155 660 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 CPN2P22792 545 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 GAB1Q13480 694 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 MLC1Q15049 377 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 FXNQ16595 210 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 TMTC4Q5T4D3 741 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 NIPAL1Q6NVV3 410 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 FAM180BQ6P0A1 224 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 GPR155Q7Z3F1 870 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 ARHGAP22Q7Z5H3 698 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 PTRH1Q86Y79 214 aaKnown RBP17.41■□□□□ 0.38
CLN3-254ENST00000637050 OR5P2Q8WZ92 322 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 JADE3Q92613 823 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 ZBED6CLQ96FA7 236 aaPredicted RBP17.41■□□□□ 0.38
CLN3-254ENST00000637050 KCTD14Q9BQ13 255 aaPredicted RBP17.41■□□□□ 0.38
CLN3-254ENST00000637050 ECSITQ9BQ95 431 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 SPRTNQ9H040 489 aaPredicted RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms