RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TRIML2Q8N7C3 387 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 NCSTNQ92542 709 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 SERINC2Q96SA4 455 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 CXorf36Q9H7Y0 433 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 GORASP2Q9H8Y8 452 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 STARD5Q9NSY2 213 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 ACSL6Q9UKU0 697 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 AURKCQ9UQB9 309 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 CACNA1EQ15878 2313 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 ZDBF2Q9HCK1 2354 aa15.97■□□□□ 0.15
CLN3-252ENST00000636907 IGHV1OR21-1A0A087WYE8 117 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 PGRMC2O15173 223 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 KCNK5O95279 499 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 GPIP06744 558 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 GLB1P16278 677 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 PSMA4P25789 261 aaKnown RBP15.96■□□□□ 0.15
CLN3-252ENST00000636907 SOAT1P35610 550 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 RGNQ15493 299 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 HLA-BQ31612 363 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.96■□□□□ 0.15
CLN3-252ENST00000636907 IRAK1BP1Q5VVH5 260 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 CPZQ66K79 652 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 MCATQ8IVS2 390 aaKnown RBP15.96■□□□□ 0.15
CLN3-252ENST00000636907 ZZZ3Q8IYH5 903 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 OR5AK3PQ8NH89 298 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 KLHL6Q8WZ60 621 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 TCTN2Q96GX1 697 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 RAB33BQ9H082 229 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 CHST8Q9H2A9 424 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 SLC35C2Q9NQQ7 365 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 ARMC1Q9NVT9 282 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 GPATCH2Q9NW75 528 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 EPHA6Q9UF33 1036 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 CES1P1Q9UKY3 287 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 CORO2BQ9UQ03 480 aa15.96■□□□□ 0.15
CLN3-252ENST00000636907 TLCD2A6NGC4 264 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 CASQ2O14958 399 aaPredicted RBP15.95■□□□□ 0.14
CLN3-252ENST00000636907 B3GALT2O43825 422 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 DNAJB6O75190 326 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 CFIP05156 583 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 MVDP53602 400 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 TRIP10Q15642 601 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 ADRM1Q16186 407 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 MTX3Q5HYI7 312 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 ZC3H12BQ5HYM0 836 aaKnown RBP15.95■□□□□ 0.14
CLN3-252ENST00000636907 TBCELQ5QJ74 424 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 LPCAT4Q643R3 524 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 SLC48A1Q6P1K1 146 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 PRSS41Q7RTY9 318 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 PTOV1Q86YD1 416 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 SAP25Q8TEE9 199 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 LRTOMTQ8WZ04 291 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 NCLNQ969V3 563 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 FAM162AQ96A26 154 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 ZBED6CLQ96FA7 236 aaPredicted RBP15.95■□□□□ 0.14
CLN3-252ENST00000636907 AHCYL2Q96HN2 611 aaKnown RBP15.95■□□□□ 0.14
CLN3-252ENST00000636907 DPH2Q9BQC3 489 aaPredicted RBP15.95■□□□□ 0.14
CLN3-252ENST00000636907 EFHD1Q9BUP0 239 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 TMEM121BQ9BXQ6 578 aaPredicted RBP15.95■□□□□ 0.14
CLN3-252ENST00000636907 NLNQ9BYT8 704 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 ACSS1Q9NUB1 689 aaPredicted RBP15.95■□□□□ 0.14
CLN3-252ENST00000636907 NLGN3Q9NZ94 848 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 SNX8Q9Y5X2 465 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 V9GYQ6 96 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 SCN3AQ9NY46 2000 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 BDP1A6H8Y1 2624 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 IGHV5-51A0A0C4DH38 117 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 ZNF860A6NHJ4 632 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 B4GAT1O43505 415 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 CREG1O75629 220 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 TIPRLO75663 272 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 NUDT7P0C024 238 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 UMPSP11172 480 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 ZNF10P21506 573 aaPredicted RBP15.95■□□□□ 0.14
CLN3-252ENST00000636907 IL10P22301 178 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 UQCRC2P22695 453 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 PEX2P28328 305 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 CNR2P34972 360 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 CHI3L1P36222 383 aaPredicted RBP15.95■□□□□ 0.14
CLN3-252ENST00000636907 LIM2P55344 173 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 OLR1P78380 273 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 TNFRSF17Q02223 184 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 HSPB3Q12988 150 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 RUNX2Q13950 521 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 COX20Q5RI15 118 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 ANGPTL8Q6UXH0 198 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 PDSS2Q86YH6 399 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 Q8N9G6 341 aaPredicted RBP15.95■□□□□ 0.14
CLN3-252ENST00000636907 TMEM102Q8N9M5 508 aaPredicted RBP15.95■□□□□ 0.14
CLN3-252ENST00000636907 OR52N2Q8NGI0 321 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 NETO1Q8TDF5 533 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 ZDHHC12Q96GR4 267 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 GLIPR2Q9H4G4 154 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 EPS8L2Q9H6S3 715 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 NEUROD4Q9HD90 331 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 SIRT3Q9NTG7 399 aaPredicted RBP15.95■□□□□ 0.14
CLN3-252ENST00000636907 KCMF1Q9P0J7 381 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 KLHL3Q9UH77 587 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 PHF11Q9UIL8 331 aa15.95■□□□□ 0.14
CLN3-252ENST00000636907 ANAPC2Q9UJX6 822 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms