RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 SAGE2PA6NJ88 616 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 EEDO75530 441 aaKnown RBP15.79■□□□□ 0.12
TRIM28-215ENST00000601150 PDYNP01213 254 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 KRT6AP02538 564 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 KRT6BP04259 564 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 ENO1P06733 434 aaKnown RBP15.79■□□□□ 0.12
TRIM28-215ENST00000601150 CPN2P22792 545 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 HMOX2P30519 316 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 KRT6CP48668 564 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 CD97P48960 835 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 NAGLUP54802 743 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 ZNF844Q08AG5 666 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 KRT71Q3SY84 523 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 CFAP157Q5JU67 520 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 CYP20A1Q6UW02 462 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 LINC00696Q6ZRV3 163 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 GPR180Q86V85 440 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 NUDT13Q86X67 352 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 EFCAB3Q8N7B9 438 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 AMER2Q8N7J2 671 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 METTL6Q8TCB7 284 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 SMC6Q96SB8 1091 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 ZNF717Q9BY31 904 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-215ENST00000601150 BRF2Q9HAW0 419 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 KCNK13Q9HB14 408 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 MMP25Q9NPA2 562 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 FARSBQ9NSD9 589 aaKnown RBP15.79■□□□□ 0.12
TRIM28-215ENST00000601150 LYARQ9NX58 379 aaKnown RBP15.79■□□□□ 0.12
TRIM28-215ENST00000601150 AHSPQ9NZD4 102 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 B3GNT3Q9Y2A9 372 aa15.79■□□□□ 0.12
TRIM28-215ENST00000601150 A0A0A6YYD5 115 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 TGFBR3LH3BV60 316 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 MANBAO00462 879 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 ESRRBO95718 433 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 FAM58BPP0C7Q3 252 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 TLX1P31314 330 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-215ENST00000601150 HNRNPH2P55795 449 aaKnown RBP15.78■□□□□ 0.12
TRIM28-215ENST00000601150 TNFRSF17Q02223 184 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 TLE1Q04724 770 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 LIPMQ5VYY2 423 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 MRM1Q6IN84 353 aaKnown RBP15.78■□□□□ 0.12
TRIM28-215ENST00000601150 H3F3CQ6NXT2 135 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 FRMD7Q6ZUT3 714 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 CLNKQ7Z7G1 428 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 AGAP11Q8TF27 550 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 SLAMF7Q9NQ25 335 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 PNO1Q9NRX1 252 aaKnown RBP15.78■□□□□ 0.12
TRIM28-215ENST00000601150 NMRK1Q9NWW6 199 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 SENP1Q9P0U3 644 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 TEKT2Q9UIF3 430 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 SLC12A4Q9UP95 1085 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 CLDN16Q9Y5I7 305 aa15.78■□□□□ 0.12
TRIM28-215ENST00000601150 CCDC151A5D8V7 595 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 A8MUA0 341 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 A8MUI8 341 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 H3BQF6 201 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 J3QKU1 62 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 RGS16O15492 202 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-215ENST00000601150 TMPRSS11DO60235 418 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 SPAG7O75391 227 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 ERLIN1O75477 346 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 SORBS2O94875 1100 aaKnown RBP15.77■□□□□ 0.12
TRIM28-215ENST00000601150 HSD3B1P14060 373 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 HSD3B2P26439 372 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 BUD31P41223 144 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-215ENST00000601150 STX4Q12846 297 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 CSTF3Q12996 717 aaKnown RBP15.77■□□□□ 0.12
TRIM28-215ENST00000601150 SERTAD2Q14140 314 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 PCLAFQ15004 111 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 TERF2Q15554 542 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 TCHHL1Q5QJ38 904 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-215ENST00000601150 ABHD17BQ5VST6 288 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 B3GNTL1Q67FW5 361 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-215ENST00000601150 Q6ZS92 163 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 PAGE2Q7Z2X7 111 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 C10orf107Q8IVU9 208 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 IQCKQ8N0W5 287 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 C7orf57Q8NEG2 295 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 NFAM1Q8NET5 270 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-215ENST00000601150 ZNF354BQ96LW1 612 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 FAM111AQ96PZ2 611 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 MRPL1Q9BYD6 325 aaKnown RBP15.77■□□□□ 0.12
TRIM28-215ENST00000601150 ILKAPQ9H0C8 392 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-215ENST00000601150 RPF2Q9H7B2 306 aaKnown RBP15.77■□□□□ 0.12
TRIM28-215ENST00000601150 MID1IP1Q9NPA3 183 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 ADAP2Q9NPF8 381 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 ADAM29Q9UKF5 820 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 ATG4BQ9Y4P1 393 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 ASB4Q9Y574 426 aa15.77■□□□□ 0.12
TRIM28-215ENST00000601150 ARHGAP10A1A4S6 786 aa15.76■□□□□ 0.11
TRIM28-215ENST00000601150 DYTNA2CJ06 578 aa15.76■□□□□ 0.11
TRIM28-215ENST00000601150 TTLL8A6PVC2 850 aa15.76■□□□□ 0.11
TRIM28-215ENST00000601150 UBFD1O14562 309 aaKnown RBP15.76■□□□□ 0.11
TRIM28-215ENST00000601150 PROM1O43490 865 aa15.76■□□□□ 0.11
TRIM28-215ENST00000601150 LDB3O75112 727 aa15.76■□□□□ 0.11
TRIM28-215ENST00000601150 ULK1O75385 1050 aa15.76■□□□□ 0.11
TRIM28-215ENST00000601150 MYO1DO94832 1006 aa15.76■□□□□ 0.11
TRIM28-215ENST00000601150 GBAP04062 536 aa15.76■□□□□ 0.11
TRIM28-215ENST00000601150 IFNA16P05015 189 aa15.76■□□□□ 0.11
TRIM28-215ENST00000601150 PPP2R1BP30154 601 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms