RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 PIK3CBP42338 1070 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 MAGEA12P43365 314 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 SERPINB9P50453 376 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 ALDH6A1Q02252 535 aaKnown RBP14.05□□□□□ -0.16
LIG1-215ENST00000597901 STX4Q12846 297 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 SLAMF1Q13291 335 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 DDX39BQ13838 428 aaKnown RBP14.05□□□□□ -0.16
LIG1-215ENST00000597901 GTF2H2Q13888 395 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 ELAVL1Q15717 326 aaKnown RBP14.05□□□□□ -0.16
LIG1-215ENST00000597901 KRTCAP3Q53RY4 240 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 GTF2H2CQ6P1K8 395 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 FJX1Q86VR8 437 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 MYLK4Q86YV6 388 aaPredicted RBP14.05□□□□□ -0.16
LIG1-215ENST00000597901 UHMK1Q8TAS1 419 aaKnown RBP14.05□□□□□ -0.16
LIG1-215ENST00000597901 PTPMT1Q8WUK0 201 aaPredicted RBP14.05□□□□□ -0.16
LIG1-215ENST00000597901 ISL2Q96A47 359 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 RGMAQ96B86 450 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 SORBS1Q9BX66 1292 aaKnown RBP14.05□□□□□ -0.16
LIG1-215ENST00000597901 ACTR8Q9H981 624 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 RNF11Q9Y3C5 154 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 IKBKGQ9Y6K9 419 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 CLCA3PQ9Y6N3 262 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 SPACA6W5XKT8 324 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 SCN2AQ99250 2005 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 TRGV8A0A0C4DH27 118 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 SYNDIG1LA6NDD5 238 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 H0YIV9 168 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 KIF2AO00139 706 aaPredicted RBP14.04□□□□□ -0.16
LIG1-215ENST00000597901 NME2P1O60361 137 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 LDB3O75112 727 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 SLC25A12O75746 678 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 KRT38O76015 456 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 NME2P22392 152 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 CPN2P22792 545 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 RPS13P62277 151 aaKnown RBP14.04□□□□□ -0.16
LIG1-215ENST00000597901 ZRSR2Q15696 482 aaKnown RBP14.04□□□□□ -0.16
LIG1-215ENST00000597901 CPSF6Q16630 551 aaKnown RBP eCLIP14.04□□□□□ -0.16
LIG1-215ENST00000597901 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.04□□□□□ -0.16
LIG1-215ENST00000597901 TECRLQ5HYJ1 363 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 METTL2BQ6P1Q9 378 aaKnown RBP14.04□□□□□ -0.16
LIG1-215ENST00000597901 GOLGA7Q7Z5G4 137 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 L3MBTL4Q8NA19 623 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 FAM98AQ8NCA5 519 aaKnown RBP14.04□□□□□ -0.16
LIG1-215ENST00000597901 MORN4Q8NDC4 146 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 KIF18AQ8NI77 898 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 DAZLQ92904 295 aaKnown RBP14.04□□□□□ -0.16
LIG1-215ENST00000597901 TMEM125Q96AQ2 219 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 ANKRD9Q96BM1 317 aaPredicted RBP14.04□□□□□ -0.16
LIG1-215ENST00000597901 PAFAH2Q99487 392 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 MTERF1Q99551 399 aaKnown RBP14.04□□□□□ -0.16
LIG1-215ENST00000597901 CCDC77Q9BR77 488 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 LIN28AQ9H9Z2 209 aaKnown RBP14.04□□□□□ -0.16
LIG1-215ENST00000597901 DMRT3Q9NQL9 472 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 PSD3Q9NYI0 1048 aa14.04□□□□□ -0.16
LIG1-215ENST00000597901 YARS2Q9Y2Z4 477 aaKnown RBP14.04□□□□□ -0.16
LIG1-215ENST00000597901 NAV2Q8IVL1 2488 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 A0A087WUV0 522 aaPredicted RBP14.03□□□□□ -0.16
LIG1-215ENST00000597901 TMEM200CA6NKL6 621 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 NPIPA5E9PKD4 350 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 ASNA1O43681 348 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 PRKNO60260 465 aaPredicted RBP14.03□□□□□ -0.16
LIG1-215ENST00000597901 UGDHO60701 494 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 ZG16O60844 167 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 ITGA10O75578 1167 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 CLDN9O95484 217 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 MLYCDO95822 493 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 COL6A2P12110 1019 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 CNTFP26441 200 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 SSR2P43308 183 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 PIK3CGP48736 1102 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 NEK2P51955 445 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 ARFIP1P53367 373 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 ID2Q02363 134 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 RBPJQ06330 500 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 SERTAD2Q14140 314 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 C16orf47Q6ZP98 133 aaPredicted RBP14.03□□□□□ -0.16
LIG1-215ENST00000597901 OR4N5Q8IXE1 308 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 TMEM156Q8N614 296 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 PTGR2Q8N8N7 351 aaPredicted RBP14.03□□□□□ -0.16
LIG1-215ENST00000597901 C7orf57Q8NEG2 295 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 DCAKDQ8WVC6 231 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 ATP6V1E2Q96A05 226 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 REPS1Q96D71 796 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 PHF21BQ96EK2 531 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 SCYL1Q96KG9 808 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 GPR137Q96N19 417 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 FRMD6Q96NE9 622 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 CENPKQ9BS16 269 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 TSPAN10Q9H1Z9 355 aaPredicted RBP14.03□□□□□ -0.16
LIG1-215ENST00000597901 NOL11Q9H8H0 719 aaKnown RBP14.03□□□□□ -0.16
LIG1-215ENST00000597901 MS4A12Q9NXJ0 267 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 ZNF180Q9UJW8 692 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 NFU1Q9UMS0 254 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 NPIPA1Q9UND3 350 aa14.03□□□□□ -0.16
LIG1-215ENST00000597901 ICE1Q9Y2F5 2266 aa14.02□□□□□ -0.16
LIG1-215ENST00000597901 C17orf105B2RV13 164 aa14.02□□□□□ -0.17
LIG1-215ENST00000597901 TRIM49D1C9J1S8 452 aa14.02□□□□□ -0.17
LIG1-215ENST00000597901 CCL21O00585 134 aa14.02□□□□□ -0.17
LIG1-215ENST00000597901 PLPP1O14494 284 aa14.02□□□□□ -0.17
LIG1-215ENST00000597901 OR7A17O14581 309 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms