RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 DDX31Q9H8H2 851 aaKnown RBP13.65□□□□□ -0.22
VRK3-206ENST00000594090 BRF2Q9HAW0 419 aa13.65□□□□□ -0.22
VRK3-206ENST00000594090 SENP1Q9P0U3 644 aa13.65□□□□□ -0.22
VRK3-206ENST00000594090 PTGFRNQ9P2B2 879 aa13.65□□□□□ -0.22
VRK3-206ENST00000594090 PHF11Q9UIL8 331 aa13.65□□□□□ -0.22
VRK3-206ENST00000594090 FBXW2Q9UKT8 454 aa13.65□□□□□ -0.22
VRK3-206ENST00000594090 SLC12A4Q9UP95 1085 aa13.65□□□□□ -0.22
VRK3-206ENST00000594090 CPAMD8Q8IZJ3 1885 aa13.65□□□□□ -0.22
VRK3-206ENST00000594090 CCDC151A5D8V7 595 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 SAGE2PA6NJ88 616 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 MANBAO00462 879 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 UBFD1O14562 309 aaKnown RBP13.64□□□□□ -0.23
VRK3-206ENST00000594090 RGS16O15492 202 aaPredicted RBP13.64□□□□□ -0.23
VRK3-206ENST00000594090 SLC28A2O43868 658 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 TMPRSS11DO60235 418 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 KRT6AP02538 564 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 KRT6BP04259 564 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 ENO1P06733 434 aaKnown RBP13.64□□□□□ -0.23
VRK3-206ENST00000594090 CREB1P16220 341 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 CPN2P22792 545 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 HMOX2P30519 316 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 SOX11P35716 441 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 CASRP41180 1078 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 KRT6CP48668 564 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 HNRNPH2P55795 449 aaKnown RBP13.64□□□□□ -0.23
VRK3-206ENST00000594090 SLC26A5P58743 744 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 TNFRSF17Q02223 184 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 CFAP157Q5JU67 520 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 CEP85LQ5SZL2 805 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 MRM1Q6IN84 353 aaKnown RBP13.64□□□□□ -0.23
VRK3-206ENST00000594090 CYP20A1Q6UW02 462 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 ISLR2Q6UXK2 745 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 ATG14Q6ZNE5 492 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 CLNKQ7Z7G1 428 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 M1APQ8TC57 530 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 TCP10LQ8TDR4 215 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 MRPL1Q9BYD6 325 aaKnown RBP13.64□□□□□ -0.23
VRK3-206ENST00000594090 MMP25Q9NPA2 562 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 LYARQ9NX58 379 aaKnown RBP13.64□□□□□ -0.23
VRK3-206ENST00000594090 MS4A12Q9NXJ0 267 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 SLC17A7Q9P2U7 560 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 BLACEA4D250 179 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 SYNDIG1LA6NDD5 238 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 H3BQF6 201 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 TYROBPO43914 113 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 CTNSO60931 367 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 GBAP04062 536 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 UQCRHP07919 91 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 HSD3B1P14060 373 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 PLA2G2AP14555 144 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 HSD3B2P26439 372 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 HTR6P50406 440 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 MFAP5Q13361 173 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 B3GNTL1Q67FW5 361 aaPredicted RBP13.64□□□□□ -0.23
VRK3-206ENST00000594090 SLC6A19Q695T7 634 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 LINC00696Q6ZRV3 163 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 GPR180Q86V85 440 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 METTL4Q8N3J2 472 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 METTL6Q8TCB7 284 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 KCNA7Q96RP8 456 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 MFRPQ9BY79 579 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 EPN3Q9H201 632 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 EPS8L2Q9H6S3 715 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 KCNK13Q9HB14 408 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 MID1IP1Q9NPA3 183 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 ADAP2Q9NPF8 381 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 ADAM29Q9UKF5 820 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 ATG4BQ9Y4P1 393 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 ASB4Q9Y574 426 aa13.64□□□□□ -0.23
VRK3-206ENST00000594090 SPENQ96T58 3664 aaKnown RBP13.63□□□□□ -0.23
VRK3-206ENST00000594090 A8MUA0 341 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 TRIM13O60858 407 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 LDB3O75112 727 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 ULK1O75385 1050 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 MYO1DO94832 1006 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 FAM58BPP0C7Q3 252 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 PPP2R1BP30154 601 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 ALDH3A1P30838 453 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 BUD31P41223 144 aaPredicted RBP13.63□□□□□ -0.23
VRK3-206ENST00000594090 GALNT1Q10472 559 aaPredicted RBP13.63□□□□□ -0.23
VRK3-206ENST00000594090 CSTF3Q12996 717 aaKnown RBP13.63□□□□□ -0.23
VRK3-206ENST00000594090 TERF2Q15554 542 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 C18orf63Q68DL7 685 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 LRIG3Q6UXM1 1119 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 PAGE2Q7Z2X7 111 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 CROCCP2Q86T23 111 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 ZADH2Q8N4Q0 377 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 PNPLA2Q96AD5 504 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 ANKRD9Q96BM1 317 aaPredicted RBP13.63□□□□□ -0.23
VRK3-206ENST00000594090 LMF1Q96S06 567 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 MECRQ9BV79 373 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 GATA5Q9BWX5 397 aaPredicted RBP13.63□□□□□ -0.23
VRK3-206ENST00000594090 RPF2Q9H7B2 306 aaKnown RBP13.63□□□□□ -0.23
VRK3-206ENST00000594090 PNO1Q9NRX1 252 aaKnown RBP13.63□□□□□ -0.23
VRK3-206ENST00000594090 AHSPQ9NZD4 102 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 TIMM22Q9Y584 194 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 CSAG2Q9Y5P2 127 aa13.63□□□□□ -0.23
VRK3-206ENST00000594090 A0A1W2PR48 441 aa13.62□□□□□ -0.23
VRK3-206ENST00000594090 PROM1O43490 865 aa13.62□□□□□ -0.23
VRK3-206ENST00000594090 PRKRAO75569 313 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms