RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 SAP18O00422 153 aaKnown RBP19.06■□□□□ 0.64
SHMT1-209ENST00000582653 IFNA16P05015 189 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 C2P06681 752 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 MTHFD2P13995 350 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 ZNF24P17028 368 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 TGM3Q08188 693 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 E2F2Q14209 437 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 UAP1Q16222 522 aaPredicted RBP19.06■□□□□ 0.64
SHMT1-209ENST00000582653 MED27Q6P2C8 311 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 SULF2Q8IWU5 870 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 LAS2Q8IYD9 372 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 OR7G3Q8NG95 312 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 VMP1Q96GC9 406 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 KCNC2Q96PR1 638 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 KLF13Q9Y2Y9 288 aaPredicted RBP19.06■□□□□ 0.64
SHMT1-209ENST00000582653 APCP25054 2843 aa19.06■□□□□ 0.64
SHMT1-209ENST00000582653 LRRC14BA6NHZ5 514 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 CTNSO60931 367 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 LDB3O75112 727 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 ITGA10O75578 1167 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 URI1O94763 535 aaPredicted RBP19.05■□□□□ 0.64
SHMT1-209ENST00000582653 ABOP16442 354 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 ATP5A1P25705 553 aaKnown RBP19.05■□□□□ 0.64
SHMT1-209ENST00000582653 HSF1Q00613 529 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 CKAP4Q07065 602 aaKnown RBP19.05■□□□□ 0.64
SHMT1-209ENST00000582653 TEX9Q8N6V9 391 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 ACOT4Q8N9L9 421 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 C16orf52Q8NHV5 167 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 PHF12Q96QT6 1004 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 TBCDQ9BTW9 1192 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 SORBS1Q9BX66 1292 aaKnown RBP19.05■□□□□ 0.64
SHMT1-209ENST00000582653 ALOXE3Q9BYJ1 711 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 OR51B5Q9H339 312 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 ADAP2Q9NPF8 381 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 SNX15Q9NRS6 342 aa19.05■□□□□ 0.64
SHMT1-209ENST00000582653 A0A087X1B8 175 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 SYNDIG1LA6NDD5 238 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 TMEM200CA6NKL6 621 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 E9PLN8 166 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 PRRG2O14669 202 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 CLDN14O95500 239 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 COX6B1P14854 86 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 EPB42P16452 691 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 ELAVL4P26378 380 aaKnown RBP19.04■□□□□ 0.64
SHMT1-209ENST00000582653 RFC3P40938 356 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 ID2Q02363 134 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 STX4Q12846 297 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 MDGA2Q7Z553 956 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 TMEM156Q8N614 296 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 AGAP11Q8TF27 550 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 PHF10Q8WUB8 498 aaKnown RBP19.04■□□□□ 0.64
SHMT1-209ENST00000582653 PTPMT1Q8WUK0 201 aaPredicted RBP19.04■□□□□ 0.64
SHMT1-209ENST00000582653 UBTD2Q8WUN7 234 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 MTFMTQ96DP5 389 aaKnown RBP19.04■□□□□ 0.64
SHMT1-209ENST00000582653 C16orf45Q96MC5 204 aaPredicted RBP19.04■□□□□ 0.64
SHMT1-209ENST00000582653 VKORC1Q9BQB6 163 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 LYRM4Q9HD34 91 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 NINJ2Q9NZG7 142 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 YARS2Q9Y2Z4 477 aaKnown RBP19.04■□□□□ 0.64
SHMT1-209ENST00000582653 CLCA3PQ9Y6N3 262 aa19.04■□□□□ 0.64
SHMT1-209ENST00000582653 A0A096LPK6 155 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 PEX1O43933 1283 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 ZFAND5O76080 213 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 HIST1H1TP22492 207 aaPredicted RBP19.03■□□□□ 0.64
SHMT1-209ENST00000582653 MEOX1P50221 254 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 PCDH1Q08174 1060 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 DDX39BQ13838 428 aaKnown RBP19.03■□□□□ 0.64
SHMT1-209ENST00000582653 RCN2Q14257 317 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 CDSNQ15517 529 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 ELAVL1Q15717 326 aaKnown RBP19.03■□□□□ 0.64
SHMT1-209ENST00000582653 PFKFB4Q16877 469 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 FAM83EQ2M2I3 478 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 AP5B1Q2VPB7 878 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 TMEM35AQ53FP2 167 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 CHSY3Q70JA7 882 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 GDF7Q7Z4P5 450 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 FGD2Q7Z6J4 655 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 MYLK4Q86YV6 388 aaPredicted RBP19.03■□□□□ 0.64
SHMT1-209ENST00000582653 EID3Q8N140 333 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 CYP4Z2PQ8N1L4 340 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 TMEM132CQ8N3T6 1108 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 ZNF321PQ8N8H1 164 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 SRFBP1Q8NEF9 429 aaKnown RBP19.03■□□□□ 0.64
SHMT1-209ENST00000582653 RHEBL1Q8TAI7 183 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 UBE2E3Q969T4 207 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 CCDC77Q9BR77 488 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 ROGDIQ9GZN7 287 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 VTI1BQ9UEU0 232 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 ANGPTL3Q9Y5C1 460 aa19.03■□□□□ 0.64
SHMT1-209ENST00000582653 SYCE1LA8MT33 242 aa19.02■□□□□ 0.64
SHMT1-209ENST00000582653 ADAM10O14672 748 aa19.02■□□□□ 0.64
SHMT1-209ENST00000582653 OR2J2O76002 312 aa19.02■□□□□ 0.64
SHMT1-209ENST00000582653 ALDOAP04075 364 aaKnown RBP19.02■□□□□ 0.64
SHMT1-209ENST00000582653 GFAPP14136 432 aa19.02■□□□□ 0.64
SHMT1-209ENST00000582653 TNNI3P19429 210 aa19.02■□□□□ 0.64
SHMT1-209ENST00000582653 GPR85P60893 370 aa19.02■□□□□ 0.64
SHMT1-209ENST00000582653 SETDB1Q15047 1291 aa19.02■□□□□ 0.64
SHMT1-209ENST00000582653 DEPDC1Q5TB30 811 aa19.02■□□□□ 0.64
SHMT1-209ENST00000582653 KHDRBS2Q5VWX1 349 aaKnown RBP19.02■□□□□ 0.64
SHMT1-209ENST00000582653 GRHL2Q6ISB3 625 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms