RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 MS4A12Q9NXJ0 267 aa18.11■□□□□ 0.49
SS18-208ENST00000577751 SPACA6W5XKT8 324 aa18.11■□□□□ 0.49
SS18-208ENST00000577751 ZNF462Q96JM2 2506 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 SYNDIG1LA6NDD5 238 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 CREB1P16220 341 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 HNRNPH2P55795 449 aaKnown RBP18.1■□□□□ 0.49
SS18-208ENST00000577751 SLC26A5P58743 744 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 SLC13A2Q13183 592 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 MFAP5Q13361 173 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 PCLAFQ15004 111 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 KRT71Q3SY84 523 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 SGO1Q5FBB7 561 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 COLEC12Q5KU26 742 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 LIPMQ5VYY2 423 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 SLC6A19Q695T7 634 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 FRMD7Q6ZUT3 714 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 GPR180Q86V85 440 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 NUDT13Q86X67 352 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 ZADH2Q8N4Q0 377 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 SIRT6Q8N6T7 355 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 NFAM1Q8NET5 270 aaPredicted RBP18.1■□□□□ 0.49
SS18-208ENST00000577751 ZIM3Q96PE6 472 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 SMC6Q96SB8 1091 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 IQCGQ9H095 443 aaKnown RBP18.1■□□□□ 0.49
SS18-208ENST00000577751 EPN3Q9H201 632 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 SENP1Q9P0U3 644 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 PTGFRNQ9P2B2 879 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 PHF11Q9UIL8 331 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 ADAM29Q9UKF5 820 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 FBXW2Q9UKT8 454 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 ATG4BQ9Y4P1 393 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 ASB4Q9Y574 426 aa18.1■□□□□ 0.49
SS18-208ENST00000577751 SPENQ96T58 3664 aaKnown RBP18.09■□□□□ 0.49
SS18-208ENST00000577751 SAGE2PA6NJ88 616 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 H3BQF6 201 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 MANBAO00462 879 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 PROM1O43490 865 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 TYROBPO43914 113 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 TMPRSS11DO60235 418 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 SPAG7O75391 227 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 SORBS2O94875 1100 aaKnown RBP18.09■□□□□ 0.49
SS18-208ENST00000577751 KRT6AP02538 564 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 KRT6BP04259 564 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 ENO1P06733 434 aaKnown RBP18.09■□□□□ 0.49
SS18-208ENST00000577751 HSD3B1P14060 373 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 CPN2P22792 545 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 HSD3B2P26439 372 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 KRT6CP48668 564 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 TERF2Q15554 542 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 TNFAIP8L3Q5GJ75 292 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 TCHHL1Q5QJ38 904 aaPredicted RBP18.09■□□□□ 0.49
SS18-208ENST00000577751 Q6ZS92 163 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 C10orf107Q8IVU9 208 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 METTL4Q8N3J2 472 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 Q8NA96 180 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 METTL6Q8TCB7 284 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 TCP10LQ8TDR4 215 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 ELP5Q8TE02 316 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 PNPLA2Q96AD5 504 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 FAM111AQ96PZ2 611 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 MRPL1Q9BYD6 325 aaKnown RBP18.09■□□□□ 0.49
SS18-208ENST00000577751 EPS8L2Q9H6S3 715 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 LYARQ9NX58 379 aaKnown RBP18.09■□□□□ 0.49
SS18-208ENST00000577751 AHSPQ9NZD4 102 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 SLC17A7Q9P2U7 560 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 PPIEQ9UNP9 301 aaKnown RBP18.09■□□□□ 0.49
SS18-208ENST00000577751 B3GNT3Q9Y2A9 372 aa18.09■□□□□ 0.49
SS18-208ENST00000577751 SERTM1A2A2V5 107 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 CCDC151A5D8V7 595 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 TRIM13O60858 407 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 ULK1O75385 1050 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 HMOX2P30519 316 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 TNFRSF17Q02223 184 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 ZNF33BQ06732 778 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 TBL3Q12788 808 aaKnown RBP18.08■□□□□ 0.48
SS18-208ENST00000577751 B3GNTL1Q67FW5 361 aaPredicted RBP18.08■□□□□ 0.48
SS18-208ENST00000577751 LINC00696Q6ZRV3 163 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 C7orf57Q8NEG2 295 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 ANKRD9Q96BM1 317 aaPredicted RBP18.08■□□□□ 0.48
SS18-208ENST00000577751 MFRPQ9BY79 579 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 RPF2Q9H7B2 306 aaKnown RBP18.08■□□□□ 0.48
SS18-208ENST00000577751 MID1IP1Q9NPA3 183 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 VTI1BQ9UEU0 232 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 SLC12A4Q9UP95 1085 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 CSAG2Q9Y5P2 127 aa18.08■□□□□ 0.48
SS18-208ENST00000577751 A0A1W2PR48 441 aa18.07■□□□□ 0.48
SS18-208ENST00000577751 A8MUA0 341 aa18.07■□□□□ 0.48
SS18-208ENST00000577751 RGS16O15492 202 aaPredicted RBP18.07■□□□□ 0.48
SS18-208ENST00000577751 LDB3O75112 727 aa18.07■□□□□ 0.48
SS18-208ENST00000577751 FAM58BPP0C7Q3 252 aa18.07■□□□□ 0.48
SS18-208ENST00000577751 TPP2P29144 1249 aaPredicted RBP18.07■□□□□ 0.48
SS18-208ENST00000577751 PPP2R1BP30154 601 aa18.07■□□□□ 0.48
SS18-208ENST00000577751 HTR6P50406 440 aa18.07■□□□□ 0.48
SS18-208ENST00000577751 GPR143P51810 404 aa18.07■□□□□ 0.48
SS18-208ENST00000577751 FOXA1P55317 472 aa18.07■□□□□ 0.48
SS18-208ENST00000577751 IGLV3-21P80748 117 aaPredicted RBP18.07■□□□□ 0.48
SS18-208ENST00000577751 TLE1Q04724 770 aa18.07■□□□□ 0.48
SS18-208ENST00000577751 GALNT1Q10472 559 aaPredicted RBP18.07■□□□□ 0.48
SS18-208ENST00000577751 CSTF3Q12996 717 aaKnown RBP18.07■□□□□ 0.48
SS18-208ENST00000577751 SERTAD2Q14140 314 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms