RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 LCLAT1Q6UWP7 414 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 TMEM182Q6ZP80 229 aaPredicted RBP4.3□□□□□ -1.72
NUP88-213ENST00000576862 NLRP14Q86W24 1093 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 OR4D10Q8NGI6 311 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 MGARPQ8TDB4 240 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 LGMNQ99538 433 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 C2orf40Q9H1Z8 148 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 UTP6Q9NYH9 597 aaKnown RBP4.3□□□□□ -1.72
NUP88-213ENST00000576862 POMT2Q9UKY4 750 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 MTF2Q9Y483 593 aaPredicted RBP4.3□□□□□ -1.72
NUP88-213ENST00000576862 CSAG2Q9Y5P2 127 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 CDK12Q9NYV4 1490 aaPredicted RBP4.3□□□□□ -1.72
NUP88-213ENST00000576862 NPHP3Q7Z494 1330 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 TTC21AQ8NDW8 1320 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.29□□□□□ -1.72
NUP88-213ENST00000576862 IGHV3-20A0A0C4DH32 117 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 ASB14A6NK59 587 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 A8MVM7 634 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 TMEM150CB9EJG8 249 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 NDC80O14777 642 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 PPIP5K2O43314 1243 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 SNAP91O60641 907 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 TBCAO75347 108 aaKnown RBP4.29□□□□□ -1.72
NUP88-213ENST00000576862 FAM58BPP0C7Q3 252 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 THEGLP0DJG4 465 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 KRT13P13646 458 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 ACADSP16219 412 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 CAPN2P17655 700 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 PRKAR2BP31323 418 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 MS4A2Q01362 244 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 UBXN1Q04323 297 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 IL10RBQ08334 325 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 MRPL28Q13084 256 aaKnown RBP4.29□□□□□ -1.72
NUP88-213ENST00000576862 ZNF177Q13360 481 aaPredicted RBP4.29□□□□□ -1.72
NUP88-213ENST00000576862 FAM106AQ4KMX7 169 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 TXNRD3NBQ6F5E7 133 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 C3P1Q6ZMU1 363 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 GPR141Q7Z602 305 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 PRUNE1Q86TP1 453 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 SLC22A15Q8IZD6 547 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 PRSS35Q8N3Z0 413 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 BRSK1Q8TDC3 778 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 CHURC1Q8WUH1 139 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 ZNF606Q8WXB4 792 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 CASP10Q92851 521 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 SLC45A3Q96JT2 553 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 RAB3IPQ96QF0 476 aaPredicted RBP4.29□□□□□ -1.72
NUP88-213ENST00000576862 SOSTQ9BQB4 213 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 RPS10P5Q9NQ39 176 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 HPF1Q9NWY4 346 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 DUSP12Q9UNI6 340 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 SMAD5-AS1Q9Y6J3 95 aa4.29□□□□□ -1.72
NUP88-213ENST00000576862 TMEM94Q12767 1356 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 NWD1Q149M9 1564 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 MAP3K19Q56UN5 1328 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 ERICH4A6NGS2 130 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 C5orf52A6NGY3 159 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 MAGEB2O15479 319 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 FLRT2O43155 660 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 KIAA0754O94854 1291 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 PGLSO95336 258 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 HSPA4LO95757 839 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 HMOX1P09601 288 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 EEF2P13639 858 aaKnown RBP4.28□□□□□ -1.72
NUP88-213ENST00000576862 HOXD10P28358 340 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 ATP5DP30049 168 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 TIA1P31483 386 aaKnown RBP eCLIP4.28□□□□□ -1.72
NUP88-213ENST00000576862 PRPHP41219 470 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 PRKCIP41743 596 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 CD86P42081 329 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 TNNT3P45378 269 aaPredicted RBP4.28□□□□□ -1.72
NUP88-213ENST00000576862 FGD3Q5JSP0 725 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 SHEQ5VZ18 495 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 DHRS11Q6UWP2 260 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 RAPH1Q70E73 1250 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 RUFY3Q7L099 469 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 GALNTL5Q7Z4T8 443 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 LYG1Q8N1E2 194 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 C17orf47Q8NEP4 570 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 OR10G7Q8NGN6 311 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 SLC26A7Q8TE54 656 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 CHPT1Q8WUD6 406 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 TAF4BQ92750 862 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 JAKMIP1Q96N16 626 aaKnown RBP4.28□□□□□ -1.72
NUP88-213ENST00000576862 GSDMAQ96QA5 445 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 INPP5KQ9BT40 448 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 DCTN5Q9BTE1 182 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 EDEM3Q9BZQ6 932 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 YY1AP1Q9H869 796 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 RAB9BQ9NP90 201 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 PFDN4Q9NQP4 134 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 CTSZQ9UBR2 303 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 TDRD15B5MCY1 1934 aaKnown RBP4.28□□□□□ -1.72
NUP88-213ENST00000576862 SHPRHQ149N8 1683 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 TOPAZ1Q8N9V7 1692 aa4.28□□□□□ -1.72
NUP88-213ENST00000576862 MAPK8IP3Q9UPT6 1336 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 TRAV18A0A075B6X5 111 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 IGHV4-30-2A0A087WSY4 118 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 IGHV3-38A0A0C4DH36 116 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 HTR3EA5X5Y0 456 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms