RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ADA2Q9NZK5 511 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 TMEM181Q9P2C4 612 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 DAPP1Q9UN19 280 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 HCN4Q9Y3Q4 1203 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 RP1P56715 2156 aa12.95□□□□□ -0.34
CCDC40-209ENST00000573474 COL5A1P20908 1838 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-209ENST00000573474 A0A1W2PRB8 838 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 ZNF860A6NHJ4 632 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 SGK494L7N484 410 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 PGRMC2O15173 223 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 PDPK1O15530 556 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 CBFA2T3O75081 653 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 NSA2O95478 260 aaKnown RBP12.94□□□□□ -0.34
CCDC40-209ENST00000573474 ANP32DO95626 131 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 CPSF4O95639 269 aaKnown RBP12.94□□□□□ -0.34
CCDC40-209ENST00000573474 NR2F6P10588 404 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 SLC6A2P23975 617 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 AVPR1BP47901 424 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 SLC7A2P52569 658 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 TNFRSF17Q02223 184 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 PRSS53Q2L4Q9 553 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 MPEG1Q2M385 716 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 SPATS1Q496A3 300 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 SAMD4BQ5PRF9 694 aaKnown RBP12.94□□□□□ -0.34
CCDC40-209ENST00000573474 PHF19Q5T6S3 580 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 YOD1Q5VVQ6 348 aaPredicted RBP12.94□□□□□ -0.34
CCDC40-209ENST00000573474 C18orf63Q68DL7 685 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 NANOGP8Q6NSW7 305 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 CA13Q8N1Q1 262 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 OR9A4Q8NGU2 314 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 DNAJB14Q8TBM8 379 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 CIDECQ96AQ7 238 aaPredicted RBP12.94□□□□□ -0.34
CCDC40-209ENST00000573474 EXOSC8Q96B26 276 aaKnown RBP12.94□□□□□ -0.34
CCDC40-209ENST00000573474 MIEF2Q96C03 454 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 ZNF501Q96CX3 271 aaPredicted RBP12.94□□□□□ -0.34
CCDC40-209ENST00000573474 CLPTM1LQ96KA5 538 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 PANX1Q96RD7 426 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 SLC39A3Q9BRY0 314 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 NANOGQ9H9S0 305 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 FGF21Q9NSA1 209 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 CUTCQ9NTM9 273 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.94□□□□□ -0.34
CCDC40-209ENST00000573474 UTS2RQ9UKP6 389 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 CES1P1Q9UKY3 287 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 PSME2Q9UL46 239 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 PCDHGB4Q9UN71 923 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 UNC13CQ8NB66 2214 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 RALGAPA1Q6GYQ0 2036 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 WDFY4Q6ZS81 3184 aa12.94□□□□□ -0.34
CCDC40-209ENST00000573474 VPS13AQ96RL7 3174 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 TRBV5-3A0A0A0MS03 114 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 A0A0A6YYC8 382 aaPredicted RBP12.93□□□□□ -0.34
CCDC40-209ENST00000573474 H0YHG0 523 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 I3L1I5 382 aaPredicted RBP12.93□□□□□ -0.34
CCDC40-209ENST00000573474 FOXS1O43638 330 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 DNAJB6O75190 326 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 RDH16O75452 317 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 CIB2O75838 187 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 MED26O95402 600 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 ZCCHC18P0CG32 403 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 HOXB9P17482 250 aaPredicted RBP12.93□□□□□ -0.34
CCDC40-209ENST00000573474 TGM1P22735 817 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 PTPN6P29350 595 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 CDKN2CP42773 168 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 ARSFP54793 590 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 PCBP4P57723 403 aaKnown RBP12.93□□□□□ -0.34
CCDC40-209ENST00000573474 OLR1P78380 273 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 E2F1Q01094 437 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 ZFP36L1Q07352 338 aaKnown RBP12.93□□□□□ -0.34
CCDC40-209ENST00000573474 ILKQ13418 452 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 RUNDC3AQ59EK9 446 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 PIGGQ5H8A4 983 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 SLC48A1Q6P1K1 146 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 ZNF621Q6ZSS3 439 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 MSRB3Q8IXL7 192 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 SLC15A3Q8IY34 581 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 KIAA2013Q8IYS2 634 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 CLECL1Q8IZS7 167 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 RCBTB1Q8NDN9 531 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 OR8J3Q8NGG0 315 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 OR4A15Q8NGL6 344 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 GOT1L1Q8NHS2 421 aaPredicted RBP12.93□□□□□ -0.34
CCDC40-209ENST00000573474 OR5P2Q8WZ92 322 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 UCN3Q969E3 161 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 TMEM125Q96AQ2 219 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 ZBED6CLQ96FA7 236 aaPredicted RBP12.93□□□□□ -0.34
CCDC40-209ENST00000573474 ANKRD27Q96NW4 1050 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 GBP5Q96PP8 586 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 PHF12Q96QT6 1004 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 SH3GL1Q99961 368 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 SLC35C2Q9NQQ7 365 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 ACSS1Q9NUB1 689 aaPredicted RBP12.93□□□□□ -0.34
CCDC40-209ENST00000573474 CMTM6Q9NX76 183 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 SLC25A37Q9NYZ2 338 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 VAPAQ9P0L0 249 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 ABCD2Q9UBJ2 740 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 CLCA2Q9UQC9 943 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 AP3M1Q9Y2T2 418 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 L3MBTL1Q9Y468 752 aa12.93□□□□□ -0.34
CCDC40-209ENST00000573474 PCDHB14Q9Y5E9 798 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms