RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 AGPAT4Q9NRZ5 378 aa12.18□□□□□ -0.46
CNOT1-220ENST00000569916 PSD3Q9NYI0 1048 aa12.18□□□□□ -0.46
CNOT1-220ENST00000569916 FBXW2Q9UKT8 454 aa12.18□□□□□ -0.46
CNOT1-220ENST00000569916 PPIEQ9UNP9 301 aaKnown RBP12.18□□□□□ -0.46
CNOT1-220ENST00000569916 SPACA6W5XKT8 324 aa12.18□□□□□ -0.46
CNOT1-220ENST00000569916 CNTRLQ7Z7A1 2325 aa12.18□□□□□ -0.46
CNOT1-220ENST00000569916 ASH1LQ9NR48 2969 aaKnown RBP12.17□□□□□ -0.46
CNOT1-220ENST00000569916 A0A0A6YYD5 115 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 A0A1W2PPM1 405 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 SYNDIG1LA6NDD5 238 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 GABRR3A8MPY1 467 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 FOXO6A8MYZ6 492 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 ZNF500O60304 480 aaPredicted RBP12.17□□□□□ -0.46
CNOT1-220ENST00000569916 DLX3O60479 287 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 PRAMEF2O60811 474 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 LDB3O75112 727 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 EEDO75530 441 aaKnown RBP12.17□□□□□ -0.46
CNOT1-220ENST00000569916 CBX6O95503 412 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 GSTA1P08263 222 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 TSPAN8P19075 237 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 TAC1P20366 129 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 CPN2P22792 545 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 PTX3P26022 381 aaPredicted RBP12.17□□□□□ -0.46
CNOT1-220ENST00000569916 BSGP35613 385 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 SLCO1A2P46721 670 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 ST13P50502 369 aaKnown RBP12.17□□□□□ -0.46
CNOT1-220ENST00000569916 GPR143P51810 404 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 CDH13P55290 713 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 HNRNPH2P55795 449 aaKnown RBP12.17□□□□□ -0.46
CNOT1-220ENST00000569916 HERVK_113P63132 956 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 SLAMF1Q13291 335 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 ELAVL1Q15717 326 aaKnown RBP12.17□□□□□ -0.46
CNOT1-220ENST00000569916 INAQ16352 499 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 ZNF678Q5SXM1 525 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 FAM219BQ5XKK7 198 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 FRG2Q64ET8 278 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 LETMD1Q6P1Q0 360 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 SH2D5Q6ZV89 423 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 MILR1Q7Z6M3 343 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 TDRPQ86YL5 185 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 ARMC10Q8N2F6 343 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 FAM26EQ8N5C1 309 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 MDS2Q8NDY4 140 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 EPS8L3Q8TE67 593 aaKnown RBP12.17□□□□□ -0.46
CNOT1-220ENST00000569916 TMEM237Q96Q45 408 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 FRG2BQ96QU4 278 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 TAAR6Q96RI8 345 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 ERVK-6Q9BXR3 956 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 CDCP1Q9H5V8 836 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 PPCSQ9HAB8 311 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 ABI3Q9P2A4 366 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 ZNF225Q9UK10 706 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 ZNF223Q9UK11 482 aaPredicted RBP12.17□□□□□ -0.46
CNOT1-220ENST00000569916 EMCNQ9ULC0 261 aa12.17□□□□□ -0.46
CNOT1-220ENST00000569916 TRBV11-1A0A0K0K1C0 115 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 MYOCOSA0A1B0GUC4 107 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 BLACEA4D250 179 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 TMPRSS11DO60235 418 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 FGF17O60258 216 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 SEMA3DO95025 777 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 OTCP00480 354 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 ATP5F1P24539 256 aaPredicted RBP12.16□□□□□ -0.46
CNOT1-220ENST00000569916 TPP2P29144 1249 aaPredicted RBP12.16□□□□□ -0.46
CNOT1-220ENST00000569916 HSD17B3P37058 310 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 CLCN2P51788 898 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 MLF1P58340 268 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 VSNL1P62760 191 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 IGLV3-21P80748 117 aaPredicted RBP12.16□□□□□ -0.46
CNOT1-220ENST00000569916 TNFRSF17Q02223 184 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 ID2Q02363 134 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 STX4Q12846 297 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 UBAP2LQ14157 1087 aaKnown RBP12.16□□□□□ -0.46
CNOT1-220ENST00000569916 RASA2Q15283 850 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 UNC50Q53HI1 259 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 C10orf62Q5T681 223 aaPredicted RBP12.16□□□□□ -0.46
CNOT1-220ENST00000569916 ZNF324BQ6AW86 544 aaPredicted RBP12.16□□□□□ -0.46
CNOT1-220ENST00000569916 TTC19Q6DKK2 380 aaPredicted RBP12.16□□□□□ -0.46
CNOT1-220ENST00000569916 MRM1Q6IN84 353 aaKnown RBP12.16□□□□□ -0.46
CNOT1-220ENST00000569916 FAM180AQ6UWF9 173 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 GPR180Q86V85 440 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 RPS19BP1Q86WX3 136 aaKnown RBP12.16□□□□□ -0.46
CNOT1-220ENST00000569916 NUDT13Q86X67 352 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 SUN3Q8TAQ9 357 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 FAR1Q8WVX9 515 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 NCLNQ969V3 563 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 ANKRD9Q96BM1 317 aaPredicted RBP12.16□□□□□ -0.46
CNOT1-220ENST00000569916 MTFMTQ96DP5 389 aaKnown RBP12.16□□□□□ -0.46
CNOT1-220ENST00000569916 VMP1Q96GC9 406 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 SIGLEC12Q96PQ1 595 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 SERPINI1Q99574 410 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 SLX1AQ9BQ83 275 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 UTP23Q9BRU9 249 aaKnown RBP12.16□□□□□ -0.46
CNOT1-220ENST00000569916 ALOXE3Q9BYJ1 711 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 DDX31Q9H8H2 851 aaKnown RBP12.16□□□□□ -0.46
CNOT1-220ENST00000569916 MS4A12Q9NXJ0 267 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 ANKRD10Q9NXR5 420 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 VTI1BQ9UEU0 232 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 TRPS1Q9UHF7 1281 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 PHF11Q9UIL8 331 aa12.16□□□□□ -0.46
CNOT1-220ENST00000569916 ATG4BQ9Y4P1 393 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms