RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 IL19Q9UHD0 177 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 UBQLN2Q9UHD9 624 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 TRMT6Q9UJA5 497 aaKnown RBP3.97□□□□□ -1.77
LINC00560-201ENST00000564593 CUX2O14529 1486 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 ARAP1Q96P48 1450 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 FYCO1Q9BQS8 1478 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 SPAG9O60271 1321 aaKnown RBP3.97□□□□□ -1.77
LINC00560-201ENST00000564593 RRBP1Q9P2E9 1410 aaKnown RBP3.97□□□□□ -1.77
LINC00560-201ENST00000564593 AQRO60306 1485 aaKnown RBP eCLIP3.97□□□□□ -1.77
LINC00560-201ENST00000564593 FGD5Q6ZNL6 1462 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 MPTX1A8MV57 137 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 ANHXE9PGG2 379 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 K7EQD1 137 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 TLR4O00206 839 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 HTATSF1O43719 755 aaKnown RBP3.97□□□□□ -1.77
LINC00560-201ENST00000564593 ANGPTL1O95841 491 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 AREGP15514 252 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 ZNF18P17022 549 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 AOC1P19801 751 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 CCR4P51679 360 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 TSTA3Q13630 321 aaPredicted RBP3.97□□□□□ -1.77
LINC00560-201ENST00000564593 NECTIN1Q15223 517 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 OR8H1Q8NGG4 311 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 OR10G7Q8NGN6 311 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 C8orf46Q8TAG6 207 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 URGCPQ8TCY9 931 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 NR4A3Q92570 626 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 DTD2Q96FN9 168 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 NSMCE3Q96MG7 304 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 RUFY1Q96T51 708 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 OPRPNQ99935 248 aaPredicted RBP3.97□□□□□ -1.77
LINC00560-201ENST00000564593 NUSAP1Q9BXS6 441 aaKnown RBP3.97□□□□□ -1.77
LINC00560-201ENST00000564593 TEX13AQ9BXU3 409 aaPredicted RBP3.97□□□□□ -1.77
LINC00560-201ENST00000564593 KCNMB3Q9NPA1 279 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 MED17Q9NVC6 651 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 ANO10Q9NW15 660 aa3.97□□□□□ -1.77
LINC00560-201ENST00000564593 STRAPQ9Y3F4 350 aaKnown RBP3.97□□□□□ -1.77
LINC00560-201ENST00000564593 FANCD2Q9BXW9 1451 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 ABCA10Q8WWZ4 1543 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 LOC105371242A0A075B767 164 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.96□□□□□ -1.78
LINC00560-201ENST00000564593 TRBV2A0A0J9YWF9 115 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 SLC9B1P1A6NJY1 282 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 CCSO14618 274 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 OGTO15294 1046 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 ARHGEF9O43307 516 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 CXCL14O95715 111 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 MT3P25713 68 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 NSFP46459 744 aaKnown RBP3.96□□□□□ -1.78
LINC00560-201ENST00000564593 CASP9P55211 416 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 TMEM50BP56557 158 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 ERVK-16P61578 105 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 HYAL1Q12794 435 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 PPP1R8Q12972 351 aaKnown RBP3.96□□□□□ -1.78
LINC00560-201ENST00000564593 ZNF177Q13360 481 aaPredicted RBP3.96□□□□□ -1.78
LINC00560-201ENST00000564593 GCKRQ14397 625 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 HEPACAMQ14CZ8 416 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 FASTKD1Q53R41 847 aaKnown RBP3.96□□□□□ -1.78
LINC00560-201ENST00000564593 CAPN13Q6MZZ7 669 aaPredicted RBP3.96□□□□□ -1.78
LINC00560-201ENST00000564593 CACUL1Q86Y37 369 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 OR52B6Q8NGF0 335 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 ATXN7L3BQ96GX2 97 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 CXorf58Q96LI9 332 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 TMEM237Q96Q45 408 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 S1PR3Q99500 378 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 AGPAT1Q99943 283 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 ABCG4Q9H172 646 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 UPF3AQ9H1J1 476 aaKnown RBP3.96□□□□□ -1.78
LINC00560-201ENST00000564593 ABCG8Q9H221 673 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 DCLRE1BQ9H816 532 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 KCNK13Q9HB14 408 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 PIGVQ9NUD9 493 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 ZDHHC18Q9NUE0 388 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 TSPAN16Q9UKR8 245 aa3.96□□□□□ -1.78
LINC00560-201ENST00000564593 MRPS18CQ9Y3D5 142 aaKnown RBP3.96□□□□□ -1.78
LINC00560-201ENST00000564593 FMN1Q68DA7 1419 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 MACROD2A1Z1Q3 448 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 A8MU76 341 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 KPNA7A9QM74 516 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.95□□□□□ -1.78
LINC00560-201ENST00000564593 G3V2L1 256 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 INPP4BO15327 924 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 TNFSF12O43508 249 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 SFTPBP07988 381 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 CNN1P51911 297 aaKnown RBP3.95□□□□□ -1.78
LINC00560-201ENST00000564593 GSCP56915 257 aaPredicted RBP3.95□□□□□ -1.78
LINC00560-201ENST00000564593 MFGE8Q08431 387 aaPredicted RBP3.95□□□□□ -1.78
LINC00560-201ENST00000564593 MOGAT2Q3SYC2 334 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 RFTN2Q52LD8 501 aaPredicted RBP3.95□□□□□ -1.78
LINC00560-201ENST00000564593 TATDN1Q6P1N9 297 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 C3P1Q6ZMU1 363 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 LRRTM1Q86UE6 522 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 METTL4Q8N3J2 472 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 CCNYQ8ND76 341 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 OR4L1Q8NH43 312 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 EXOC6Q8TAG9 804 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 C11orf45Q8TAV5 145 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 GLYATL1Q969I3 302 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 SLCO4A1Q96BD0 722 aa3.95□□□□□ -1.78
LINC00560-201ENST00000564593 POM121L2Q96KW2 1035 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms