RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 RPS5P46782 204 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 CD83Q01151 205 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 LARS2Q15031 903 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 DNAJB7Q7Z6W7 309 aaPredicted RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 NOXA1Q86UR1 476 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 ZNF461Q8TAF7 563 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 NEIL2Q969S2 332 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 DIRAS2Q96HU8 199 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 ELAC1Q9H777 363 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 LSM7Q9UK45 103 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 LSM2Q9Y333 95 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 SNX11Q9Y5W9 270 aa13.34□□□□□ -0.27
VPS9D1-202ENST00000561976 YES1P07947 543 aa13.33□□□□□ -0.27
VPS9D1-202ENST00000561976 OSMP13725 252 aa13.33□□□□□ -0.27
VPS9D1-202ENST00000561976 EEF1A2Q05639 463 aaKnown RBP13.33□□□□□ -0.27
VPS9D1-202ENST00000561976 MEDAGQ5VYS4 303 aa13.33□□□□□ -0.27
VPS9D1-202ENST00000561976 PAQR6Q6TCH4 344 aa13.33□□□□□ -0.27
VPS9D1-202ENST00000561976 RNF180Q86T96 592 aa13.33□□□□□ -0.27
VPS9D1-202ENST00000561976 METTL3Q86U44 580 aaKnown RBP13.33□□□□□ -0.27
VPS9D1-202ENST00000561976 LILRA3Q8N6C8 439 aaPredicted RBP13.33□□□□□ -0.27
VPS9D1-202ENST00000561976 SLC7A6Q92536 515 aa13.33□□□□□ -0.27
VPS9D1-202ENST00000561976 TMEM203Q969S6 136 aa13.33□□□□□ -0.27
VPS9D1-202ENST00000561976 SYT17Q9BSW7 474 aa13.33□□□□□ -0.27
VPS9D1-202ENST00000561976 OR51B5Q9H339 312 aa13.33□□□□□ -0.27
VPS9D1-202ENST00000561976 RPL36Q9Y3U8 105 aaKnown RBP13.33□□□□□ -0.27
VPS9D1-202ENST00000561976 PLXNB3Q9ULL4 1909 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 A0A1W2PRB8 838 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 HYKKA2RU49 373 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 C5orf58C9J3I9 102 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 SH3BP5O60239 455 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 GREM1O60565 184 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 PSIP1O75475 530 aaKnown RBP13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 SLCO2B1O94956 709 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 FURINP09958 794 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 ARAFP10398 606 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 IMPA1P29218 277 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 TAS2R50P59544 299 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 HYAL2Q12891 473 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 HNRNPA0Q13151 305 aaKnown RBP13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 NCF4Q15080 339 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 FAM180BQ6P0A1 224 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 ZNF438Q7Z4V0 828 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 VN1R5Q7Z5H4 357 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 NPAS4Q8IUM7 802 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 TRIM48Q8IWZ4 208 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 LAS2Q8IYD9 372 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 CAMKK1Q8N5S9 505 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 TCEANCQ8N8B7 351 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 ECHDC3Q96DC8 303 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 WDFY2Q96P53 400 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 TSSK6Q9BXA6 273 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 FAM83DQ9H4H8 585 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 RC3H2Q9HBD1 1191 aaKnown RBP13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 RPRD1BQ9NQG5 326 aaKnown RBP13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 GULP1Q9UBP9 304 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 MAU2Q9Y6X3 613 aa13.33□□□□□ -0.28
VPS9D1-202ENST00000561976 A0A1W2PQL4 384 aaPredicted RBP13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 SMIM30A4D0T7 59 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 ADAP00813 363 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 HBQ1P09105 142 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 TSPAN19P0C672 248 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 ELNP15502 786 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 MYL9P24844 172 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 PBLDP30039 288 aaPredicted RBP13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 GSTM5P46439 218 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 XKP51811 444 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 LIM2P55344 173 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 DSTNP60981 165 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 SNRPGP62308 76 aaKnown RBP13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 ZNF91Q05481 1191 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 MPEG1Q2M385 716 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 GPAT3Q53EU6 434 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 PYDC2Q56P42 97 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 RPS26P11Q5JNZ5 115 aaPredicted RBP13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 C22orf39Q6P5X5 142 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 Q6ZNB5 142 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 DPY19L3Q6ZPD9 716 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 USP30Q70CQ3 517 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 WDR48Q8TAF3 677 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 REPS1Q96D71 796 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 TRMT2BQ96GJ1 504 aaKnown RBP13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 TMEM175Q9BSA9 504 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 C11orf54Q9H0W9 315 aaPredicted RBP13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 SLA2Q9H6Q3 261 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 NDUFB11Q9NX14 153 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 IQCMA0A1B0GVH7 501 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 FAM25AB3EWG3 89 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 FAM25CB3EWG5 89 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 FAM25GB3EWG6 89 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 FFAR1O14842 300 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 PLD2O14939 933 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 TSPAN6O43657 245 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 CLEC2LP0C7M8 214 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 TRAPPC2P0DI81 140 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 TRAPPC2BP0DI82 140 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 PRKCAP17252 672 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 CST5P28325 142 aaPredicted RBP13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 CA8P35219 290 aa13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 ATN1P54259 1190 aaPredicted RBP13.32□□□□□ -0.28
VPS9D1-202ENST00000561976 PCBP3P57721 371 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms