RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 TMEM216Q9P0N5 145 aa12.74□□□□□ -0.37
SMAD3-214ENST00000560402 GABRR3A8MPY1 467 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 GALR3O60755 368 aaPredicted RBP12.73□□□□□ -0.37
SMAD3-214ENST00000560402 HNRNPCL1O60812 293 aaKnown RBP12.73□□□□□ -0.37
SMAD3-214ENST00000560402 TRIM13O60858 407 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 TSPAN12O95859 305 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 FHP07954 510 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 RBP1P09455 135 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 LTA4HP09960 611 aaKnown RBP12.73□□□□□ -0.37
SMAD3-214ENST00000560402 NPPBP16860 134 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 AHRP35869 848 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 RASSF2P50749 326 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 SMSP52788 366 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 CDKN2DP55273 166 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 OR4D2P58180 307 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 ALDH6A1Q02252 535 aaKnown RBP12.73□□□□□ -0.37
SMAD3-214ENST00000560402 HECTD2Q5U5R9 776 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 FCRLBQ6BAA4 426 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 ZYG11AQ6WRX3 759 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 Q6ZPB1 254 aaPredicted RBP12.73□□□□□ -0.37
SMAD3-214ENST00000560402 QSOX2Q6ZRP7 698 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 ZNF740Q8NDX6 193 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 FRMD6Q96NE9 622 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 MACROD1Q9BQ69 325 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 MRPL57Q9BQC6 102 aaKnown RBP12.73□□□□□ -0.37
SMAD3-214ENST00000560402 MECRQ9BV79 373 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 RBCK1Q9BYM8 510 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 MRPL46Q9H2W6 279 aaKnown RBP12.73□□□□□ -0.37
SMAD3-214ENST00000560402 GPAMQ9HCL2 828 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 ZFP69BQ9UJL9 534 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 EMCNQ9ULC0 261 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 VWA7Q9Y334 891 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 CACNA1CQ13936 2221 aa12.73□□□□□ -0.37
SMAD3-214ENST00000560402 A0A0G2JND7 137 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 ZNF860A6NHJ4 632 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 PHGDHO43175 533 aaKnown RBP12.72□□□□□ -0.37
SMAD3-214ENST00000560402 OR1F1O43749 312 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 SNNO75324 88 aaPredicted RBP12.72□□□□□ -0.37
SMAD3-214ENST00000560402 CDC123O75794 336 aaPredicted RBP12.72□□□□□ -0.37
SMAD3-214ENST00000560402 HSPA4LO95757 839 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 SLC35E2BP0CK96 405 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 ELAVL4P26378 380 aaKnown RBP12.72□□□□□ -0.37
SMAD3-214ENST00000560402 GABRB3P28472 473 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 SERPINB5P36952 375 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 SLC1A6P48664 564 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 REEP5Q00765 189 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 OCRLQ01968 901 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 OC90Q02509 493 aaPredicted RBP12.72□□□□□ -0.37
SMAD3-214ENST00000560402 CSHL1Q14406 222 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 PCLAFQ15004 111 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 ZNF630Q2M218 657 aaPredicted RBP12.72□□□□□ -0.37
SMAD3-214ENST00000560402 DEFB134Q4QY38 66 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 CFAP157Q5JU67 520 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 LIPMQ5VYY2 423 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 CGB2Q6NT52 195 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 SPNS2Q8IVW8 549 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 EID3Q8N140 333 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 TRPV3Q8NET8 790 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 ELP5Q8TE02 316 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 C10orf82Q8WW14 230 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 SLC5A11Q8WWX8 675 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 TSLPQ969D9 159 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 PDLIM5Q96HC4 596 aaKnown RBP12.72□□□□□ -0.37
SMAD3-214ENST00000560402 SIGLEC12Q96PQ1 595 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 NPAS2Q99743 824 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 PELI2Q9HAT8 420 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 ZNF835Q9Y2P0 537 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 DYRK1BQ9Y463 629 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 PCNX1Q96RV3 2341 aa12.72□□□□□ -0.37
SMAD3-214ENST00000560402 CCDC189A1A4V9 331 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 SYNDIG1LA6NDD5 238 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 CFAP73A6NFT4 308 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 SAGE2PA6NJ88 616 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 FAM227AF5H4B4 570 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 PSMD12O00232 456 aaPredicted RBP12.71□□□□□ -0.37
SMAD3-214ENST00000560402 NEURL1O76050 574 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 ESRRAP11474 423 aaPredicted RBP12.71□□□□□ -0.37
SMAD3-214ENST00000560402 PRF1P14222 555 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 COX6B1P14854 86 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 HTR1EP28566 365 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 CD96P40200 585 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 SCTRP47872 440 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 TAS2R39P59534 338 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 ABCE1P61221 599 aaKnown RBP12.71□□□□□ -0.37
SMAD3-214ENST00000560402 SF3A3Q12874 501 aaKnown RBP eCLIP12.71□□□□□ -0.371e-10■■■■■ 34.8
SMAD3-214ENST00000560402 TBCCQ15814 346 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 C3AR1Q16581 482 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 SLC22A9Q8IVM8 553 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 C10orf107Q8IVU9 208 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 GHDCQ8N2G8 530 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 OR5T3Q8NGG3 340 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 PIWIL2Q8TC59 973 aaKnown RBP12.71□□□□□ -0.37
SMAD3-214ENST00000560402 KCTD4Q8WVF5 259 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 NEIL2Q969S2 332 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 PYCR2Q96C36 320 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 OR4K3Q96R72 315 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 AIF1LQ9BQI0 150 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 TMEM120AQ9BXJ8 343 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 SLC6A16Q9GZN6 736 aa12.71□□□□□ -0.37
SMAD3-214ENST00000560402 TRIM45Q9H8W5 580 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms