RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 INO80CQ6PI98 192 aaPredicted RBP20.5■□□□□ 0.87
SNX1-210ENST00000560260 CYP20A1Q6UW02 462 aa20.5■□□□□ 0.87
SNX1-210ENST00000560260 PAGE2Q7Z2X7 111 aa20.5■□□□□ 0.87
SNX1-210ENST00000560260 MMP21Q8N119 569 aa20.5■□□□□ 0.87
SNX1-210ENST00000560260 MAGEB18Q96M61 343 aa20.5■□□□□ 0.87
SNX1-210ENST00000560260 C7orf26Q96N11 449 aa20.5■□□□□ 0.87
SNX1-210ENST00000560260 LRTM1Q9HBL6 345 aa20.5■□□□□ 0.87
SNX1-210ENST00000560260 LYARQ9NX58 379 aaKnown RBP20.5■□□□□ 0.87
SNX1-210ENST00000560260 SIRT5Q9NXA8 310 aa20.5■□□□□ 0.87
SNX1-210ENST00000560260 MCM8Q9UJA3 840 aa20.5■□□□□ 0.87
SNX1-210ENST00000560260 POLR3HQ9Y535 204 aaPredicted RBP20.5■□□□□ 0.87
SNX1-210ENST00000560260 CLDN16Q9Y5I7 305 aa20.5■□□□□ 0.87
SNX1-210ENST00000560260 PSMD12O00232 456 aaPredicted RBP20.49■□□□□ 0.87
SNX1-210ENST00000560260 AIFM1O95831 613 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 HEXBP07686 556 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 KITP10721 976 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 CPN2P22792 545 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 HK2P52789 917 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 UCNP55089 124 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 MFSD4BQ5TF39 518 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 FAAH2Q6GMR7 532 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 RGS9BPQ6ZS82 235 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 LANCL3Q6ZV70 420 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 MAVSQ7Z434 540 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 MRGPREQ86SM8 312 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 GPR180Q86V85 440 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 SCUBE1Q8IWY4 988 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 ARFGAP2Q8N6H7 521 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 ADAMTS18Q8TE60 1221 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 FCRL1Q96LA6 429 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 PPP1R36Q96LQ0 422 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 NUF2Q9BZD4 464 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 SEMA3GQ9NS98 782 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 C1orf109Q9NX04 203 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 DLGAP4Q9Y2H0 992 aa20.49■□□□□ 0.87
SNX1-210ENST00000560260 WASHC1A8K0Z3 465 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 SOCS6O14544 535 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 PROM1O43490 865 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 ALOX12BO75342 701 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 MAOAP21397 527 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 MMP11P24347 488 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 MAPK12P53778 367 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 RPL38P63173 70 aaKnown RBP20.48■□□□□ 0.87
SNX1-210ENST00000560260 VAC14Q08AM6 782 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 SSPNQ14714 243 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 CRTC2Q53ET0 693 aaPredicted RBP20.48■□□□□ 0.87
SNX1-210ENST00000560260 TMEM205Q6UW68 189 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 QSOX2Q6ZRP7 698 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 FAM47EQ6ZV65 393 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 AMER2Q8N7J2 671 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 C8orf44Q96CB5 159 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 TM4SF18Q96CE8 201 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 NECTIN3Q9NQS3 549 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 PHF11Q9UIL8 331 aa20.48■□□□□ 0.87
SNX1-210ENST00000560260 PKD1L2Q7Z442 2459 aa20.47■□□□□ 0.87
SNX1-210ENST00000560260 DSPP15924 2871 aaKnown RBP20.47■□□□□ 0.87
SNX1-210ENST00000560260 IGKV3D-11A0A0A0MRZ8 115 aa20.47■□□□□ 0.87
SNX1-210ENST00000560260 ARHGAP10A1A4S6 786 aa20.47■□□□□ 0.87
SNX1-210ENST00000560260 JAK1P23458 1154 aa20.47■□□□□ 0.87
SNX1-210ENST00000560260 CXADRP78310 365 aa20.47■□□□□ 0.87
SNX1-210ENST00000560260 GUCY1A3Q02108 690 aa20.47■□□□□ 0.87
SNX1-210ENST00000560260 ATP1A4Q13733 1029 aa20.47■□□□□ 0.87
SNX1-210ENST00000560260 GALNTL6Q49A17 601 aa20.47■□□□□ 0.87
SNX1-210ENST00000560260 RFTN2Q52LD8 501 aaPredicted RBP20.47■□□□□ 0.87
SNX1-210ENST00000560260 CLNKQ7Z7G1 428 aa20.47■□□□□ 0.87
SNX1-210ENST00000560260 WDR75Q8IWA0 830 aaKnown RBP20.47■□□□□ 0.87
SNX1-210ENST00000560260 PLPP5Q8NEB5 264 aa20.47■□□□□ 0.87
SNX1-210ENST00000560260 PRTFDC1Q9NRG1 225 aa20.47■□□□□ 0.87
SNX1-210ENST00000560260 MASP2O00187 686 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 SDHDO14521 159 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 ZNF195O14628 629 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 PEX11AO75192 247 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 SEC22BO75396 215 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 PRR35P0CG20 571 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 NR2F6P10588 404 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 TACR1P25103 407 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 MC1RQ01726 317 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 EEF1A2Q05639 463 aaKnown RBP20.46■□□□□ 0.87
SNX1-210ENST00000560260 VWA5B1Q5TIE3 1220 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 NOXRED1Q6NXP6 359 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 C19orf48Q6RUI8 117 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 KIRREL2Q6UWL6 708 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 RAB43Q86YS6 212 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 HOMEZQ8IX15 550 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 ZNF595Q8IYB9 648 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 KIRREL3Q8IZU9 778 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 FAM76AQ8TAV0 307 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 C16orf78Q8WTQ4 265 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 SNRNP27Q8WVK2 155 aaKnown RBP20.46■□□□□ 0.87
SNX1-210ENST00000560260 MEAF6Q9HAF1 191 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 PRDM9Q9NQV7 894 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 MMACHCQ9Y4U1 282 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 MGAQ8IWI9 3026 aa20.46■□□□□ 0.87
SNX1-210ENST00000560260 IGHV3-20A0A0C4DH32 117 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 MYOCOSA0A1B0GUC4 107 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 GLOD5A6NK44 160 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 HDAC3O15379 428 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 FGF17O60258 216 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 IGHEP01854 428 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 CYC1P08574 325 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms