RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 FOLR1P15328 257 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 IL1RNP18510 177 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 ALDH9A1P49189 494 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 COL9A2Q14055 689 aaPredicted RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 CSRP2Q16527 193 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 NDUFA9Q16795 377 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 PRSS53Q2L4Q9 553 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 ANXA8L1Q5VT79 327 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 PRMT9Q6P2P2 845 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 TMEM154Q6P9G4 183 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 PRSS41Q7RTY9 318 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 ANKRD46Q86W74 232 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 PDSS2Q86YH6 399 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 SCUBE1Q8IWY4 988 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 ULK2Q8IYT8 1036 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 VPS37AQ8NEZ2 397 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 DNAJB8Q8NHS0 232 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 GFM1Q96RP9 751 aaKnown RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 MAPKAP1Q9BPZ7 522 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 INPP5KQ9BT40 448 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 SPRTNQ9H040 489 aaPredicted RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 IRF2BPLQ9H1B7 796 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 SPAG4Q9NPE6 437 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 ENAMQ9NRM1 1142 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 NCDNQ9UBB6 729 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 NAALAD2Q9Y3Q0 740 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 A0A096LPI6 279 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 C1orf226A1L170 272 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 HYKKA2RU49 373 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 FITM1A5D6W6 292 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 ZNF860A6NHJ4 632 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 TMEM150CB9EJG8 249 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 H3BMH7 237 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 RNASET2O00584 256 aaKnown RBP10.62□□□□□ -0.71
USP3-218ENST00000560202 NTN3O00634 580 aaPredicted RBP10.62□□□□□ -0.71
USP3-218ENST00000560202 RFXANKO14593 260 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 PROM1O43490 865 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 DNAJB6O75190 326 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 ERN1O75460 977 aaKnown RBP10.62□□□□□ -0.71
USP3-218ENST00000560202 OR2B3O76000 313 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 GP1BAP07359 652 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 IMPDH2P12268 514 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 DDX5P17844 614 aaKnown RBP10.62□□□□□ -0.71
USP3-218ENST00000560202 SLC6A2P23975 617 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 TRPC1P48995 793 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 LIM2P55344 173 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 LRRC74AQ0VAA2 488 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 RUNX2Q13950 521 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 GRM7Q14831 915 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 GPR19Q15760 415 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 MPEG1Q2M385 716 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 MUM1Q2TAK8 710 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 LRIF1Q5T3J3 769 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 GARNL3Q5VVW2 1013 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 C18orf63Q68DL7 685 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 OR52E8Q6IFG1 317 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 PGM2L1Q6PCE3 622 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 NAXDQ8IW45 347 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 CLECL1Q8IZS7 167 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 EFCAB3Q8N7B9 438 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 FAM47BQ8NA70 645 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 DNAJB14Q8TBM8 379 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 UCN3Q969E3 161 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 CIDECQ96AQ7 238 aaPredicted RBP10.62□□□□□ -0.71
USP3-218ENST00000560202 ZNF764Q96H86 408 aaPredicted RBP10.62□□□□□ -0.71
USP3-218ENST00000560202 C10orf90Q96M02 699 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 CCDC115Q96NT0 180 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 PANX1Q96RD7 426 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 PAIP1Q9H074 479 aaKnown RBP10.62□□□□□ -0.71
USP3-218ENST00000560202 ANKHQ9HCJ1 492 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 PARD6AQ9NPB6 346 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 FAM86C1Q9NVL1 165 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 TAS2R7Q9NYW3 318 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 ADA2Q9NZK5 511 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 EHD3Q9NZN3 535 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 KCMF1Q9P0J7 381 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 TMEM181Q9P2C4 612 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 PHF11Q9UIL8 331 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 BTNL2Q9UIR0 455 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 DAPP1Q9UN19 280 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 PCDHA9Q9Y5H5 950 aa10.62□□□□□ -0.71
USP3-218ENST00000560202 MDC1Q14676 2089 aaKnown RBP10.61□□□□□ -0.71
USP3-218ENST00000560202 SGK494L7N484 410 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 LRP3O75074 770 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 PRKRAO75569 313 aaKnown RBP10.61□□□□□ -0.71
USP3-218ENST00000560202 PDE5AO76074 875 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 MED26O95402 600 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 CPSF4O95639 269 aaKnown RBP10.61□□□□□ -0.71
USP3-218ENST00000560202 AIFM1O95831 613 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 EFNA1P20827 205 aaPredicted RBP10.61□□□□□ -0.71
USP3-218ENST00000560202 PTPN6P29350 595 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 NBL1P41271 181 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 CDKN2CP42773 168 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 PTDSS1P48651 473 aaKnown RBP10.61□□□□□ -0.71
USP3-218ENST00000560202 SLC7A2P52569 658 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 HNRNPFP52597 415 aaKnown RBP10.61□□□□□ -0.71
USP3-218ENST00000560202 EMP3P54852 163 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 OLR1P78380 273 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 FAM53BQ14153 422 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 TBC1D25Q3MII6 688 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms