RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SSUH2Q9Y2M2 353 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 MRPS18BQ9Y676 258 aaKnown RBP9.5□□□□□ -0.89
USP3-216ENST00000559873 FREM2Q5SZK8 3169 aa9.5□□□□□ -0.89
USP3-216ENST00000559873 PKD1L2Q7Z442 2459 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 C1orf226A1L170 272 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 TAF4O00268 1085 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 LSM1O15116 133 aaKnown RBP9.49□□□□□ -0.89
USP3-216ENST00000559873 B4GALT2O60909 372 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 CNOT3O75175 753 aaKnown RBP9.49□□□□□ -0.89
USP3-216ENST00000559873 CDC123O75794 336 aaPredicted RBP9.49□□□□□ -0.89
USP3-216ENST00000559873 UMODP07911 640 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 ANXA4P09525 319 aaPredicted RBP9.49□□□□□ -0.89
USP3-216ENST00000559873 PCSK2P16519 638 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 F8A1P23610 371 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 ASMTP46597 345 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 RRADP55042 308 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 AP2B1P63010 937 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 SNRPNP63162 240 aaKnown RBP9.49□□□□□ -0.89
USP3-216ENST00000559873 VAC14Q08AM6 782 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 STX4Q12846 297 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 BIKQ13323 160 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 IL10RAQ13651 578 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 ERV3-1Q14264 604 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 HEPACAMQ14CZ8 416 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 ST3GAL2Q16842 350 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 SMU1Q2TAY7 513 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 UGT3A2Q3SY77 523 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 GALNTL6Q49A17 601 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 CES4AQ5XG92 561 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 OR52E8Q6IFG1 317 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 SHISA6Q6ZSJ9 500 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 FAM47EQ6ZV65 393 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 MRGPREQ86SM8 312 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 FNDC5Q8NAU1 212 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 CHTF18Q8WVB6 975 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 TANKQ92844 425 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 FER1L6-AS2Q96M78 137 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 PTCHD1Q96NR3 888 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 MAPKAP1Q9BPZ7 522 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 SIKE1Q9BRV8 207 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 PELOQ9BRX2 385 aaKnown RBP9.49□□□□□ -0.89
USP3-216ENST00000559873 NUF2Q9BZD4 464 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 C20orf27Q9GZN8 174 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 VN1R1Q9GZP7 353 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 TUBB1Q9H4B7 451 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 RPF2Q9H7B2 306 aaKnown RBP9.49□□□□□ -0.89
USP3-216ENST00000559873 ZNF395Q9H8N7 513 aaPredicted RBP9.49□□□□□ -0.89
USP3-216ENST00000559873 LANCL2Q9NS86 450 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 GIMAP4Q9NUV9 329 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 PNPOQ9NVS9 261 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 PSME2Q9UL46 239 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 EIF3LQ9Y262 564 aaKnown RBP9.49□□□□□ -0.89
USP3-216ENST00000559873 MAN2B2Q9Y2E5 1009 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 POLR3HQ9Y535 204 aaPredicted RBP9.49□□□□□ -0.89
USP3-216ENST00000559873 PTGDR2Q9Y5Y4 395 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 EPG5Q9HCE0 2579 aa9.49□□□□□ -0.89
USP3-216ENST00000559873 SRRM3A6NNA2 597 aaPredicted RBP9.48□□□□□ -0.89
USP3-216ENST00000559873 K7ENP7 123 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 DYRK3O43781 588 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 TMPRSS11DO60235 418 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 CTNSO60931 367 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 JRKO75564 520 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 TGDSO95455 350 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 AIFM1O95831 613 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 GBAP04062 536 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 PRKAR1AP10644 381 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 KITP10721 976 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 COX7A2P14406 83 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 DRD2P14416 443 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 ITPKBP27987 946 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 RPL3P39023 403 aaKnown RBP9.48□□□□□ -0.89
USP3-216ENST00000559873 HNRNPH2P55795 449 aaKnown RBP9.48□□□□□ -0.89
USP3-216ENST00000559873 ERVK-8P63133 956 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 CXADRP78310 365 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 SERTAD2Q14140 314 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 NSDHLQ15738 373 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 NDUFAF5Q5TEU4 345 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 C6orf163Q5TEZ5 329 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 IRAK1BP1Q5VVH5 260 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 MRM1Q6IN84 353 aaKnown RBP9.48□□□□□ -0.89
USP3-216ENST00000559873 INO80CQ6PI98 192 aaPredicted RBP9.48□□□□□ -0.89
USP3-216ENST00000559873 Q6ZSR9 355 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 ACAD11Q709F0 780 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 PPP1R32Q7Z5V6 425 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 SAMD14Q8IZD0 417 aaPredicted RBP9.48□□□□□ -0.89
USP3-216ENST00000559873 TMEM132CQ8N3T6 1108 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 TMEM102Q8N9M5 508 aaPredicted RBP9.48□□□□□ -0.89
USP3-216ENST00000559873 PLPP5Q8NEB5 264 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 OR2T11Q8NH01 316 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 CDC26Q8NHZ8 85 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 C11orf24Q96F05 449 aaPredicted RBP9.48□□□□□ -0.89
USP3-216ENST00000559873 CSF3RQ99062 836 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 EBPLQ9BY08 206 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 MEAF6Q9HAF1 191 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 MYNNQ9NPC7 610 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 MIEF1Q9NQG6 463 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 NOP53Q9NZM5 478 aaKnown RBP9.48□□□□□ -0.89
USP3-216ENST00000559873 EHD3Q9NZN3 535 aa9.48□□□□□ -0.89
USP3-216ENST00000559873 G3BP2Q9UN86 482 aaKnown RBP9.48□□□□□ -0.89
USP3-216ENST00000559873 MAPRE3Q9UPY8 281 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms