RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CALB2P22676 271 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 BUD31P41223 144 aaPredicted RBP8.16□□□□□ -1.1
USP3-208ENST00000558285 SSR2P43308 183 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 RAB38P57729 211 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 MAT1AQ00266 395 aaKnown RBP8.16□□□□□ -1.1
USP3-208ENST00000558285 ZNF844Q08AG5 666 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 STX4Q12846 297 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 SLC13A2Q13183 592 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 RAPSNQ13702 412 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 GTF2H2Q13888 395 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 SERTAD2Q14140 314 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 MEP1AQ16819 746 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 SPDYAQ5MJ70 313 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 C6orf163Q5TEZ5 329 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 GTF2H2CQ6P1K8 395 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 TIFABQ6ZNK6 161 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 PAGE2Q7Z2X7 111 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 LAS2Q8IYD9 372 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 TMEM132CQ8N3T6 1108 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 ARHGEF39Q8N4T4 335 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 GALNT11Q8NCW6 608 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 DYDC1Q8WWB3 177 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 KLHL29Q96CT2 875 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 CNDP1Q96KN2 507 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 ART5Q96L15 291 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 SERPINI1Q99574 410 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 PELOQ9BRX2 385 aaKnown RBP8.16□□□□□ -1.1
USP3-208ENST00000558285 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.16□□□□□ -1.1
USP3-208ENST00000558285 ELOVL6Q9H5J4 265 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 ZNF552Q9H707 407 aaPredicted RBP8.16□□□□□ -1.1
USP3-208ENST00000558285 IPPKQ9H8X2 491 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 RNPEPL1Q9HAU8 725 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 KCNK13Q9HB14 408 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 PRTFDC1Q9NRG1 225 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 IKZF3Q9UKT9 509 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 SNX6Q9UNH7 406 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 COMMD3-BMI1R4GMX3 469 aa8.16□□□□□ -1.1
USP3-208ENST00000558285 H0YIV9 168 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 KLK8O60259 260 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 B4GALT2O60909 372 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 CRYABP02511 175 aaKnown RBP8.15□□□□□ -1.1
USP3-208ENST00000558285 STATHP02808 62 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 HSD17B3P37058 310 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 PGGT1BP53609 377 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 PLA2G16P53816 162 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 ZNF169Q14929 603 aaPredicted RBP8.15□□□□□ -1.1
USP3-208ENST00000558285 KPNB1Q14974 876 aaKnown RBP8.15□□□□□ -1.1
USP3-208ENST00000558285 SFT2D3Q587I9 215 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 TECRLQ5HYJ1 363 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 FAM69BQ5VUD6 431 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 SLC6A19Q695T7 634 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 PAPD4Q6PIY7 484 aaKnown RBP8.15□□□□□ -1.1
USP3-208ENST00000558285 CYP20A1Q6UW02 462 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 FAM180AQ6UWF9 173 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 ASRGL1Q7L266 308 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 ANKRD37Q7Z713 158 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 CENPLQ8N0S6 344 aaPredicted RBP8.15□□□□□ -1.1
USP3-208ENST00000558285 CYP4X1Q8N118 509 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 RIBC1Q8N443 379 aaPredicted RBP8.15□□□□□ -1.1
USP3-208ENST00000558285 PTGR2Q8N8N7 351 aaPredicted RBP8.15□□□□□ -1.1
USP3-208ENST00000558285 ANKRD53Q8N9V6 530 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 CREB3L4Q8TEY5 395 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 DAZLQ92904 295 aaKnown RBP8.15□□□□□ -1.1
USP3-208ENST00000558285 GFM2Q969S9 779 aaKnown RBP8.15□□□□□ -1.1
USP3-208ENST00000558285 MS4A6EQ96DS6 147 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 C5orf34Q96MH7 638 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 TMEM237Q96Q45 408 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 SMC6Q96SB8 1091 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 MMP25Q9NPA2 562 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 LYARQ9NX58 379 aaKnown RBP8.15□□□□□ -1.1
USP3-208ENST00000558285 XPR1Q9UBH6 696 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 COPG1Q9Y678 874 aaKnown RBP8.15□□□□□ -1.1
USP3-208ENST00000558285 ASPMQ8IZT6 3477 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 SPEGQ15772 3267 aa8.15□□□□□ -1.1
USP3-208ENST00000558285 BPTFQ12830 3046 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 ZNF860A6NHJ4 632 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 HNRNPCL1O60812 293 aaKnown RBP8.15□□□□□ -1.11
USP3-208ENST00000558285 CDH16O75309 829 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 GLRA3O75311 464 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 SEC24DO94855 1032 aaPredicted RBP8.15□□□□□ -1.11
USP3-208ENST00000558285 SEMA3DO95025 777 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 MED26O95402 600 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 KRT6AP02538 564 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 KRT6BP04259 564 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 IFNA16P05015 189 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 EEF1DP29692 281 aaKnown RBP8.15□□□□□ -1.11
USP3-208ENST00000558285 ECHS1P30084 290 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 MAGEA12P43365 314 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 KRT6CP48668 564 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 ZNF33BQ06732 778 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 DDX39BQ13838 428 aaKnown RBP8.15□□□□□ -1.11
USP3-208ENST00000558285 SLC29A2Q14542 456 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 RASA2Q15283 850 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 SYT16Q17RD7 645 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 ADPRMQ3LIE5 342 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 KHDRBS2Q5VWX1 349 aaKnown RBP8.15□□□□□ -1.11
USP3-208ENST00000558285 OR52E8Q6IFG1 317 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 ABHD17CQ6PCB6 329 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 IGFL2Q6UWQ7 119 aa8.15□□□□□ -1.11
USP3-208ENST00000558285 LINC00696Q6ZRV3 163 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms