RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 NECTIN3Q9NQS3 549 aa13.48□□□□□ -0.25
USP3-205ENST00000557884 PRDM9Q9NQV7 894 aa13.48□□□□□ -0.25
USP3-205ENST00000557884 PRTFDC1Q9NRG1 225 aa13.48□□□□□ -0.25
USP3-205ENST00000557884 NMRK1Q9NWW6 199 aa13.48□□□□□ -0.25
USP3-205ENST00000557884 MRPS33Q9Y291 106 aaKnown RBP13.48□□□□□ -0.25
USP3-205ENST00000557884 TRAF6Q9Y4K3 522 aa13.48□□□□□ -0.25
USP3-205ENST00000557884 ATG4BQ9Y4P1 393 aa13.48□□□□□ -0.25
USP3-205ENST00000557884 SPACA6W5XKT8 324 aa13.48□□□□□ -0.25
USP3-205ENST00000557884 BOD1L1Q8NFC6 3051 aa13.48□□□□□ -0.25
USP3-205ENST00000557884 ARHGAP10A1A4S6 786 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 A8MUA0 341 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 TGFBR3LH3BV60 316 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 SEC24DO94855 1032 aaPredicted RBP13.47□□□□□ -0.25
USP3-205ENST00000557884 TPP2P29144 1249 aaPredicted RBP13.47□□□□□ -0.25
USP3-205ENST00000557884 SERPINB5P36952 375 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 ARFIP1P53367 373 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 ABCE1P61221 599 aaKnown RBP13.47□□□□□ -0.25
USP3-205ENST00000557884 ID2Q02363 134 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 ACTN3Q08043 901 aaPredicted RBP13.47□□□□□ -0.25
USP3-205ENST00000557884 LY6DQ14210 128 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 PCOLCEQ15113 449 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 SFT2D3Q587I9 215 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 CCNYL2Q5T2Q4 361 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 KANK2Q63ZY3 851 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 MRM1Q6IN84 353 aaKnown RBP13.47□□□□□ -0.25
USP3-205ENST00000557884 MED25Q71SY5 747 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 NDUFAF7Q7L592 441 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 PAGE2Q7Z2X7 111 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 CPEB2Q7Z5Q1 589 aaKnown RBP13.47□□□□□ -0.25
USP3-205ENST00000557884 GPR180Q86V85 440 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 APLFQ8IW19 511 aaPredicted RBP13.47□□□□□ -0.25
USP3-205ENST00000557884 PARP9Q8IXQ6 854 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 ZNF595Q8IYB9 648 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 EXD3Q8N9H8 876 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 TMEM102Q8N9M5 508 aaPredicted RBP13.47□□□□□ -0.25
USP3-205ENST00000557884 CLEC1AQ8NC01 280 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 CHTF18Q8WVB6 975 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 NACC2Q96BF6 587 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 VPS50Q96JG6 964 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 UBL7Q96S82 380 aaPredicted RBP13.47□□□□□ -0.25
USP3-205ENST00000557884 LYARQ9NX58 379 aaKnown RBP13.47□□□□□ -0.25
USP3-205ENST00000557884 C19orf25Q9UFG5 118 aaPredicted RBP13.47□□□□□ -0.25
USP3-205ENST00000557884 ZDHHC2Q9UIJ5 367 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 PHF11Q9UIL8 331 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 MMACHCQ9Y4U1 282 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 ASB4Q9Y574 426 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 CACNA1GO43497 2377 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 KALRNO60229 2985 aa13.47□□□□□ -0.25
USP3-205ENST00000557884 LOC102723996A0A087X1L8 192 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 IGHV1-45A0A0A0MS14 117 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 NSG1A0A0A6YYJ2 146 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 A0A1W2PR48 441 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 GLOD5A6NK44 160 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 HMGB1P1B2RPK0 211 aaPredicted RBP13.46□□□□□ -0.25
USP3-205ENST00000557884 TMEM114B3SHH9 223 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 CLDN4O14493 209 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 LDB3O75112 727 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 AIFM1O95831 613 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 CHEK2O96017 543 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 HPP00738 406 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 CELA2AP08217 269 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 CYC1P08574 325 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 LINC00032P0C843 101 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 NR2F6P10588 404 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 PPP2R1BP30154 601 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 SLC1A6P48664 564 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 MAPK12P53778 367 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 SLC18A1P54219 525 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 OR4D2P58180 307 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 TNFRSF17Q02223 184 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 ACSM2AQ08AH3 577 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 BST1Q10588 318 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 STX3Q13277 289 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 KCNAB2Q13303 367 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 ACSM2BQ68CK6 577 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 RIPOR1Q6ZS17 1223 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 SCUBE1Q8IWY4 988 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 OR4N5Q8IXE1 308 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 DDIASQ8IXT1 998 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 CLYBLQ8N0X4 340 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 TWIST2Q8WVJ9 160 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 UCN3Q969E3 161 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 EBPLQ9BY08 206 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 C20orf27Q9GZN8 174 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 ZNF700Q9H0M5 742 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 ACBD3Q9H3P7 528 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 TUBB1Q9H4B7 451 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 ATP13A2Q9NQ11 1180 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 TEX10Q9NXF1 929 aaPredicted RBP13.46□□□□□ -0.25
USP3-205ENST00000557884 ADAM29Q9UKF5 820 aa13.46□□□□□ -0.25
USP3-205ENST00000557884 IGKV3D-11A0A0A0MRZ8 115 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 SERTM1A2A2V5 107 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 WASHC1A8K0Z3 465 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 PCDH17O14917 1159 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 PIP5K1BO14986 540 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 PROM1O43490 865 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 PCDH7O60245 1069 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 CTNSO60931 367 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 FGF4P08620 206 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 GRK2P25098 689 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms