RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 DUX4L3P0CJ86 424 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 DUX4L4P0CJ87 422 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 DUX4L5P0CJ88 424 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 DUX4L6P0CJ89 424 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 DUX4L7P0CJ90 424 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 FOLR2P14207 255 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 SREBF1P36956 1147 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 CRYBB2P43320 205 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 RBP2P50120 134 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 POLR2JP52435 117 aaKnown RBP13.24□□□□□ -0.29
SHMT2-226ENST00000556825 MTPNP58546 118 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 HNRNPKP61978 463 aaKnown RBP eCLIP13.24□□□□□ -0.29
SHMT2-226ENST00000556825 PPP3R1P63098 170 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 UBE2IP63279 158 aaKnown RBP13.24□□□□□ -0.29
SHMT2-226ENST00000556825 HNRNPA0Q13151 305 aaKnown RBP13.24□□□□□ -0.29
SHMT2-226ENST00000556825 STRIP1Q5VSL9 837 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 NAXDQ8IW45 347 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 KCNJ9Q92806 393 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 FAM162AQ96A26 154 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 NTAN1Q96AB6 310 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 HRASLS5Q96KN8 279 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 TEX37Q96LM6 180 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 SPATA13Q96N96 652 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 B3GNT5Q9BYG0 378 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 XYLT2Q9H1B5 865 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 ZFP57Q9NU63 452 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 METTL1Q9UBP6 276 aaKnown RBP13.24□□□□□ -0.29
SHMT2-226ENST00000556825 DUX4Q9UBX2 424 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 PISDQ9UG56 409 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 PCDHB7Q9Y5E2 793 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 DNAJC15Q9Y5T4 150 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 OR6C74A6NCV1 312 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 SLC16A4O15374 487 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 VPS4BO75351 444 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 CDRT1O95170 752 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 ITGBL1O95965 494 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-226ENST00000556825 RECKO95980 971 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 C4BPAP04003 597 aaKnown RBP13.24□□□□□ -0.29
SHMT2-226ENST00000556825 SAGP10523 405 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-226ENST00000556825 CXCL2P19875 107 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 SDC2P34741 201 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 ACLYP53396 1101 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 LRRC32Q14392 662 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 LAPTM4AQ15012 233 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 ARHGAP15Q53QZ3 475 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 CARD16Q5EG05 197 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 NAA40Q86UY6 237 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 TRIM69Q86WT6 500 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 SPAG16Q8N0X2 631 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 PUSL1Q8N0Z8 303 aaKnown RBP13.24□□□□□ -0.29
SHMT2-226ENST00000556825 SVBPQ8N300 66 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 OR2T12Q8NG77 320 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 MTFMTQ96DP5 389 aaKnown RBP13.24□□□□□ -0.29
SHMT2-226ENST00000556825 PGLYRP2Q96PD5 576 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 GPR61Q9BZJ8 451 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 ELAC1Q9H777 363 aaKnown RBP13.24□□□□□ -0.29
SHMT2-226ENST00000556825 HHATLQ9HCP6 504 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 WBP1LQ9NX94 342 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 PCDHB10Q9UN67 800 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 PCDHB9Q9Y5E1 797 aa13.24□□□□□ -0.29
SHMT2-226ENST00000556825 LTBP1Q14766 1721 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 METTL21EPA6NDL7 271 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 MARCH11A6NNE9 402 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 DISC1C4P0D8 188 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 NEDD8-MDP1E9PL57 170 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 PIP5K1BO14986 540 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 SLC22A3O75751 556 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 SIX6O95475 246 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 VIPP01282 170 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 SCG5P05408 212 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 IL1RNP18510 177 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 PSMA1P25786 263 aaKnown RBP13.23□□□□□ -0.29
SHMT2-226ENST00000556825 PDHA2P29803 388 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 GCGRP47871 477 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 STAT5BP51692 787 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 DIO3P55073 304 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 SMAD4Q13485 552 aaKnown RBP13.23□□□□□ -0.29
SHMT2-226ENST00000556825 GANABQ14697 944 aaKnown RBP13.23□□□□□ -0.29
SHMT2-226ENST00000556825 GUCA2BQ16661 112 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 ATP13A5Q4VNC0 1218 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 C3orf38Q5JPI3 329 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 MFSD14BQ5SR56 506 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 TDRD10Q5VZ19 366 aaKnown RBP13.23□□□□□ -0.29
SHMT2-226ENST00000556825 TCEAL6Q6IPX3 200 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 TMEM179Q6ZVK1 233 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 SPATA19Q7Z5L4 167 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 RAB44Q7Z6P3 723 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-226ENST00000556825 TAC4Q86UU9 113 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 ZNF511Q8NB15 262 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 OR10H5Q8NGA6 315 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 CYP2W1Q8TAV3 490 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 RHOVQ96L33 236 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 TSNAXQ99598 290 aaKnown RBP13.23□□□□□ -0.29
SHMT2-226ENST00000556825 ARHGAP39Q9C0H5 1083 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 NCOR1P1Q9H4R4 102 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 DCAF13Q9NV06 445 aaKnown RBP13.23□□□□□ -0.29
SHMT2-226ENST00000556825 EXO1Q9UQ84 846 aaKnown RBP13.23□□□□□ -0.29
SHMT2-226ENST00000556825 DLGAP4Q9Y2H0 992 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 TRBV23OR9-2A0A075B6M9 112 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 A0A087X1B8 175 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms