RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 POLR1BQ9H9Y6 1135 aa13.71□□□□□ -0.21
SHMT2-210ENST00000553950 TEX10Q9NXF1 929 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-210ENST00000553950 CCDC167Q9P0B6 97 aa13.71□□□□□ -0.21
SHMT2-210ENST00000553950 ARMCX1Q9P291 453 aa13.71□□□□□ -0.21
SHMT2-210ENST00000553950 DHCR7Q9UBM7 475 aaKnown RBP13.71□□□□□ -0.21
SHMT2-210ENST00000553950 ATP6V1HQ9UI12 483 aa13.71□□□□□ -0.21
SHMT2-210ENST00000553950 NXT1Q9UKK6 140 aaKnown RBP13.71□□□□□ -0.21
SHMT2-210ENST00000553950 FBXW2Q9UKT8 454 aa13.71□□□□□ -0.21
SHMT2-210ENST00000553950 PCDHA9Q9Y5H5 950 aa13.71□□□□□ -0.21
SHMT2-210ENST00000553950 SEC16AO15027 2179 aa13.71□□□□□ -0.22
SHMT2-210ENST00000553950 ZNF860A6NHJ4 632 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 CCDC154A6NI56 674 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 CCT8L1PA6NM43 557 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 NR5A2O00482 541 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 ANGPT2O15123 496 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 PROM1O43490 865 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 ONECUT2O95948 504 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 SNRPB2P08579 225 aaKnown RBP13.7□□□□□ -0.22
SHMT2-210ENST00000553950 ITIH1P19827 911 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 S100A3P33764 101 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 RORAP35398 523 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 ALDH9A1P49189 494 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 UFM1P61960 85 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 SHC2P98077 582 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 TARDBPQ13148 414 aaKnown RBP eCLIP13.7□□□□□ -0.22
SHMT2-210ENST00000553950 BIKQ13323 160 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 CYLC2Q14093 348 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-210ENST00000553950 CPTPQ5TA50 214 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 PAOXQ6QHF9 649 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 BLOC1S3Q6QNY0 202 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 MED25Q71SY5 747 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 DGLUCYQ7Z3D6 616 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 RIMKLAQ8IXN7 391 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 FITM2Q8N6M3 262 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 OR8J2Q8NGG1 315 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 TANKQ92844 425 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 COL26A1Q96A83 441 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 TBC1D20Q96BZ9 403 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 SPDL1Q96EA4 605 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 MAPKAP1Q9BPZ7 522 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 ACTL8Q9H568 366 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 RPF2Q9H7B2 306 aaKnown RBP13.7□□□□□ -0.22
SHMT2-210ENST00000553950 NEUROD4Q9HD90 331 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 APMAPQ9HDC9 416 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 NDE1Q9NXR1 346 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 ZNF282Q9UDV7 671 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-210ENST00000553950 BAIAP2L1Q9UHR4 511 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 TAGLN3Q9UI15 199 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 LEF1Q9UJU2 399 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-210ENST00000553950 SATB2Q9UPW6 733 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 MMACHCQ9Y4U1 282 aa13.7□□□□□ -0.22
SHMT2-210ENST00000553950 CAPN14A8MX76 684 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 PDPK1O15530 556 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 CHST10O43529 356 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 AKAP10O43572 662 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 ATP5HO75947 161 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 KIAA0754O94854 1291 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 LRATO95237 230 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 MED26O95402 600 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 ALBP02768 609 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 PGRP06401 933 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 FHP07954 510 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 CALB2P22676 271 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 RBMS1P29558 406 aaKnown RBP13.69□□□□□ -0.22
SHMT2-210ENST00000553950 PLA2G5P39877 138 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 NME5P56597 212 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 OCA2Q04671 838 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 RUNX2Q13950 521 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 PUM1Q14671 1186 aaKnown RBP eCLIP13.69□□□□□ -0.22
SHMT2-210ENST00000553950 FAM174BQ3ZCQ3 159 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 MMEL1Q495T6 779 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 NKAIN1Q4KMZ8 207 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 SLC48A1Q6P1K1 146 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 AMER3Q8N944 861 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 PCYOX1LQ8NBM8 494 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 OR9I1Q8NGQ6 314 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 OR51Q1Q8NH59 317 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 KLHL29Q96CT2 875 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 ZBED6CLQ96FA7 236 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-210ENST00000553950 EGLN2Q96KS0 407 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 CTRCQ99895 268 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 PELOQ9BRX2 385 aaKnown RBP13.69□□□□□ -0.22
SHMT2-210ENST00000553950 DLL3Q9NYJ7 618 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 TAS2R7Q9NYW3 318 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 KCMF1Q9P0J7 381 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 HCN3Q9P1Z3 774 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 TRPC4Q9UBN4 977 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 GPN3Q9UHW5 284 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-210ENST00000553950 UTS2RQ9UKP6 389 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 NDUFAF1Q9Y375 327 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 ATG4BQ9Y4P1 393 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 TMEM184BQ9Y519 407 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-210ENST00000553950 PCDHGA7Q9Y5G6 932 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 ZNF780BQ9Y6R6 833 aa13.69□□□□□ -0.22
SHMT2-210ENST00000553950 IGLV3-12A0A075B6K2 115 aa13.68□□□□□ -0.22
SHMT2-210ENST00000553950 A0A1W2PP18 115 aa13.68□□□□□ -0.22
SHMT2-210ENST00000553950 A0A1W2PR48 441 aa13.68□□□□□ -0.22
SHMT2-210ENST00000553950 MEN1O00255 615 aa13.68□□□□□ -0.22
SHMT2-210ENST00000553950 RNASET2O00584 256 aaKnown RBP13.68□□□□□ -0.22
SHMT2-210ENST00000553950 PCDH17O14917 1159 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms