RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 IL17BQ9UHF5 180 aa11.54□□□□□ -0.56
SHMT2-209ENST00000553949 DCTN4Q9UJW0 460 aa11.54□□□□□ -0.56
SHMT2-209ENST00000553949 KCND3Q9UK17 655 aa11.54□□□□□ -0.56
SHMT2-209ENST00000553949 EIF3LQ9Y262 564 aaKnown RBP11.54□□□□□ -0.56
SHMT2-209ENST00000553949 FARSAQ9Y285 508 aaKnown RBP11.54□□□□□ -0.56
SHMT2-209ENST00000553949 PTRH2Q9Y3E5 179 aaKnown RBP11.54□□□□□ -0.56
SHMT2-209ENST00000553949 PCDHGA6Q9Y5G7 932 aa11.54□□□□□ -0.56
SHMT2-209ENST00000553949 CEP295Q9C0D2 2601 aa11.54□□□□□ -0.56
SHMT2-209ENST00000553949 KLK10O43240 276 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 GUCY1B2O75343 617 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 PRKRAO75569 313 aaKnown RBP11.53□□□□□ -0.56
SHMT2-209ENST00000553949 AIFM1O95831 613 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 TROVE2P10155 538 aaKnown RBP eCLIP11.53□□□□□ -0.56
SHMT2-209ENST00000553949 NR2F6P10588 404 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 SDC1P18827 310 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 JAK1P23458 1154 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 TACR1P25103 407 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 TLX1P31314 330 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-209ENST00000553949 BUD31P41223 144 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-209ENST00000553949 GSTM5P46439 218 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 SEC24CP53992 1094 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 TAS2R50P59544 299 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 RPS18P62269 152 aaKnown RBP11.53□□□□□ -0.56
SHMT2-209ENST00000553949 ERVK-8P63133 956 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 KLC1Q07866 573 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 ZNF763Q0D2J5 394 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 SRSF6Q13247 344 aaKnown RBP11.53□□□□□ -0.56
SHMT2-209ENST00000553949 MAD2L1Q13257 205 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-209ENST00000553949 TUBB8Q3ZCM7 444 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 MINDY4Q4G0A6 757 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 MFSD4BQ5TF39 518 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 IL23RQ5VWK5 629 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 NXNQ6DKJ4 435 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 OGFOD2Q6N063 350 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 RIPOR1Q6ZS17 1223 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 ACAD11Q709F0 780 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 TMEM151BQ8IW70 566 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 TMEM52Q8NDY8 209 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 OR2Y1Q8NGV0 311 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 EBF4Q9BQW3 602 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 EFHD1Q9BUP0 239 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 ACTL8Q9H568 366 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 TEX10Q9NXF1 929 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-209ENST00000553949 ASIC5Q9NY37 505 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 NOP53Q9NZM5 478 aaKnown RBP11.53□□□□□ -0.56
SHMT2-209ENST00000553949 TCFL5Q9UL49 500 aa11.53□□□□□ -0.56
SHMT2-209ENST00000553949 MRPS33Q9Y291 106 aaKnown RBP11.53□□□□□ -0.56
SHMT2-209ENST00000553949 WBP11Q9Y2W2 641 aaKnown RBP11.53□□□□□ -0.56
SHMT2-209ENST00000553949 AHCTF1Q8WYP5 2266 aa11.52□□□□□ -0.56
SHMT2-209ENST00000553949 A0A0G2JND7 137 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 BLACEA4D250 179 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 GMNCA6NCL1 334 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 OR2W5A6NFC9 320 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 CLDN4O14493 209 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 RECKO95980 971 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 HEXBP07686 556 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 UMODP07911 640 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 IL3P08700 152 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 PRPS2P11908 318 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 BCKDHAP12694 445 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 EIF2S3P41091 472 aaKnown RBP11.52□□□□□ -0.57
SHMT2-209ENST00000553949 FOLR3P41439 243 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 HNRNPFP52597 415 aaKnown RBP11.52□□□□□ -0.57
SHMT2-209ENST00000553949 EMP2P54851 167 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 RHAGQ02094 409 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 LSM12Q3MHD2 195 aaKnown RBP11.52□□□□□ -0.57
SHMT2-209ENST00000553949 NDUFAF5Q5TEU4 345 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 IKBIPQ70UQ0 350 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 SPATA19Q7Z5L4 167 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 PARP9Q8IXQ6 854 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 ZNF595Q8IYB9 648 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 MMP21Q8N119 569 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 LIX1Q8N485 282 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 CEP70Q8NHQ1 597 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 CDC26Q8NHZ8 85 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.52□□□□□ -0.57
SHMT2-209ENST00000553949 STON2Q8WXE9 905 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 UCN3Q969E3 161 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 TSSK3Q96PN8 268 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 CRB3Q9BUF7 120 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 CCDC28BQ9BUN5 200 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 FAIM2Q9BWQ8 316 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 VN1R1Q9GZP7 353 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 RPF2Q9H7B2 306 aaKnown RBP11.52□□□□□ -0.57
SHMT2-209ENST00000553949 WDR41Q9HAD4 459 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 KCNK13Q9HB14 408 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 MYNNQ9NPC7 610 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 TCF7L2Q9NQB0 619 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 PRTFDC1Q9NRG1 225 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 HEY2Q9UBP5 337 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 BAIAP2L1Q9UHR4 511 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 C3orf18Q9UK00 162 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 MKL2Q9ULH7 1088 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 RAXQ9Y2V3 346 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 PCDHA9Q9Y5H5 950 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 MRPS18BQ9Y676 258 aaKnown RBP11.52□□□□□ -0.57
SHMT2-209ENST00000553949 FRYQ5TBA9 3013 aa11.52□□□□□ -0.57
SHMT2-209ENST00000553949 C1orf226A1L170 272 aa11.51□□□□□ -0.57
SHMT2-209ENST00000553949 TMEM8BA6NDV4 472 aa11.51□□□□□ -0.57
SHMT2-209ENST00000553949 GLOD5A6NK44 160 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms