RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TRPS1Q9UHF7 1281 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CD84Q9UIB8 345 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 POLHQ9Y253 713 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 HYKKA2RU49 373 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ZAR1LA6NP61 321 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 HEPACAM2A8MVW5 462 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 FABP7O15540 132 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 HPGDSO60760 199 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF623O75123 536 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CLDN7O95471 211 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ALDH1A1P00352 501 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TFPIP10646 304 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CD9P21926 228 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ERP29P30040 261 aaKnown RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ETV5P41161 510 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 RECQLP46063 649 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 RPIAP49247 311 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 SLC11A1P49279 550 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 MNX1P50219 401 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ETV1P50549 477 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 LIM2P55344 173 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CTBP2P56545 445 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 RPS25P62851 125 aaKnown RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 FKBP1BP68106 108 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 RAE1P78406 368 aaKnown RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 MC1RQ01726 317 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 RBBP4Q09028 425 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 PUM1Q14671 1186 aaKnown RBP eCLIP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 EIF4HQ15056 248 aaKnown RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 POU4F3Q15319 338 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 PDZK1Q5T2W1 519 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CST9Q5W186 159 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ANKS3Q6ZW76 656 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 SHFQ7M4L6 423 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TSPAN33Q86UF1 283 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 MMP21Q8N119 569 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ZBTB2Q8N680 514 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TMEM145Q8NBT3 493 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 FBXO22Q8NEZ5 403 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 OR8H1Q8NGG4 311 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 NFKBIDQ8NI38 313 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 BTN2A2Q8WVV5 523 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TRIM63Q969Q1 353 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CIDECQ96AQ7 238 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 MED8Q96G25 268 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CRELD1Q96HD1 420 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 FUBP3Q96I24 572 aaKnown RBP eCLIP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 C8orf48Q96LL4 319 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 WDFY2Q96P53 400 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 PKP4Q99569 1192 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 P2RY13Q9BPV8 354 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 KATNB1Q9BVA0 655 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 C1QTNF7Q9BXJ2 289 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 NMNAT1Q9HAN9 279 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 FNIP2Q9P278 1114 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 SLC45A1Q9Y2W3 748 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 NUMA1Q14980 2115 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 SLC38A8A6NNN8 435 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 B8ZZF3 427 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 PLK4O00444 970 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 KPNA5O15131 536 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 SHOXO15266 292 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 ADAM12O43184 909 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 SEC14L5O43304 696 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 CLDN11O75508 207 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 NTN1O95631 604 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 IGLV3-27P01718 113 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 KRT6AP02538 564 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 C1QBP02746 253 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 KRT6BP04259 564 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 TRAPPC2P0DI81 140 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 TRAPPC2BP0DI82 140 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 GLULP15104 373 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 AOAHP28039 575 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 CCR7P32248 378 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 SOX18P35713 384 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 NNMTP40261 264 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 LIMS1P48059 325 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 CSNK1DP48730 415 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 SMSP52788 366 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 HBA1P69905 142 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 OLR1P78380 273 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 ABATP80404 500 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 B4GALNT1Q00973 533 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 CACNG1Q06432 222 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 SREBF2Q12772 1141 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 NFATC2Q13469 925 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 MRPL58Q14197 206 aaKnown RBP4.63□□□□□ -1.67
LIMA1-214ENST00000552783 QPRTQ15274 297 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 TXNDC8Q6A555 127 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 FAAH2Q6GMR7 532 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF770Q6IQ21 691 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-214ENST00000552783 TMEM65Q6PI78 240 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 BRAT1Q6PJG6 821 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 RSPO2Q6UXX9 243 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-214ENST00000552783 UNC5DQ6UXZ4 953 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 IDO2Q6ZQW0 420 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 TAS1R1Q7RTX1 841 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 HMGN2P46Q86SG4 172 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 TMEM173Q86WV6 379 aaPredicted RBP4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms