RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 A0A087WYN8 130 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 MAGEB16A2A368 324 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 PGRMC2O15173 223 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 KIF5CO60282 957 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 SAP30O75446 220 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 PNPP00491 289 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 PRKAR1AP10644 381 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 SERPINH1P50454 418 aaKnown RBP4.26□□□□□ -1.73
LIMA1-205ENST00000550592 DCDC1P59894 354 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 FKBP1BP68106 108 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 UBXN1Q04323 297 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 FGD3Q5JSP0 725 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 NOTCH2NLQ7Z3S9 236 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 TMEM99Q8N816 258 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 DDHD1Q8NEL9 900 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 LPCAT1Q8NF37 534 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 MRGPRDQ8TDS7 321 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 SNX21Q969T3 373 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 GMPPAQ96IJ6 420 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-205ENST00000550592 LRR1Q96L50 414 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 DUX3Q96PT4 197 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 TDRD1Q9BXT4 1180 aaKnown RBP4.26□□□□□ -1.73
LIMA1-205ENST00000550592 OSBPL8Q9BZF1 889 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 AKIRIN1Q9H9L7 192 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-205ENST00000550592 INTS10Q9NVR2 710 aaKnown RBP4.26□□□□□ -1.73
LIMA1-205ENST00000550592 NARFQ9UHQ1 456 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 FBXW2Q9UKT8 454 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 GAB2Q9UQC2 676 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 WDR37Q9Y2I8 494 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 KNSTRNQ9Y448 316 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 CACNA1BQ00975 2339 aa4.26□□□□□ -1.73
LIMA1-205ENST00000550592 FAM208AQ9UK61 1670 aaKnown RBP4.26□□□□□ -1.73
LIMA1-205ENST00000550592 AFDNP55196 1824 aaKnown RBP4.25□□□□□ -1.73
LIMA1-205ENST00000550592 SLX4Q8IY92 1834 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 VCANP13611 3396 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 KIF7Q2M1P5 1343 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 PRR23AA6NEV1 266 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 A8MVM7 634 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 CYTIPO60759 359 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 MT-ND2P03891 347 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 CFC1BP0CG36 223 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 CFC1P0CG37 223 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 HLA-DPA1P20036 260 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 AADACP22760 399 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 SRD5A2P31213 254 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 SOX3P41225 446 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 RPA4Q13156 261 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 ITGA9Q13797 1035 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 LASP1Q14847 261 aaKnown RBP4.25□□□□□ -1.73
LIMA1-205ENST00000550592 TMEM132DQ14C87 1099 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 EFTUD2Q15029 972 aaKnown RBP eCLIP4.25□□□□□ -1.73
LIMA1-205ENST00000550592 DUSP5Q16690 384 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 TMEM30BQ3MIR4 351 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 KCTD11Q693B1 232 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 SIGLEC15Q6ZMC9 328 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 PRSS42Q7Z5A4 293 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 PTAR1Q7Z6K3 402 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-205ENST00000550592 ASPGQ86U10 573 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 HOGA1Q86XE5 327 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 EPSTI1Q96J88 318 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 LITAFQ99732 161 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 KRTAP1-5Q9BYS1 174 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 SLC39A8Q9C0K1 460 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 ZNF696Q9H7X3 374 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 COMMD8Q9NX08 183 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 HACD3Q9P035 362 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 PYGO1Q9Y3Y4 419 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 SELENOKQ9Y6D0 94 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 COLEC10Q9Y6Z7 277 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 MYH14Q7Z406 1995 aaKnown RBP4.25□□□□□ -1.73
LIMA1-205ENST00000550592 KDRP35968 1356 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 WDR81Q562E7 1941 aa4.25□□□□□ -1.73
LIMA1-205ENST00000550592 MEIOCA2RUB1 952 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 C15orf61A6NNL5 157 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 PRR23D1E9PI22 279 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-205ENST00000550592 M0R296 226 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 DDX39AO00148 427 aaKnown RBP4.24□□□□□ -1.73
LIMA1-205ENST00000550592 CACNB4O00305 520 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-205ENST00000550592 KERAO60938 352 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 LETM1O95202 739 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-205ENST00000550592 OLFM2O95897 454 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 PRR23D2P0DMB1 279 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-205ENST00000550592 CLCN4P51793 760 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 AP1B1Q10567 949 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 NPRL3Q12980 569 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 GRB14Q14449 540 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 TAB1Q15750 504 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 STXBP2Q15833 593 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 ADAMTSL4-AS1Q5T5F5 129 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 PRAMEF8Q5VWM4 474 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 C15orf52Q6ZUT6 534 aaKnown RBP4.24□□□□□ -1.73
LIMA1-205ENST00000550592 LAX1Q8IWV1 398 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 CNTN4Q8IWV2 1026 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 ZC3H3Q8IXZ2 948 aaKnown RBP4.24□□□□□ -1.73
LIMA1-205ENST00000550592 RAB42Q8N4Z0 105 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 PSMA8Q8TAA3 256 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 MAPK15Q8TD08 544 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 SMAP2Q8WU79 429 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-205ENST00000550592 WBP2Q969T9 261 aa4.24□□□□□ -1.73
LIMA1-205ENST00000550592 DCPSQ96C86 337 aaKnown RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms