RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 NOXRED1Q6NXP6 359 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 SPACA3Q8IXA5 215 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 DTWD1Q8N5C7 304 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 OR2T11Q8NH01 316 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 ACTRT2Q8TDY3 377 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 METTL21AQ8WXB1 218 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 THAP4Q8WY91 577 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 STARD8Q92502 1023 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 MAPKAP1Q9BPZ7 522 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 CRB3Q9BUF7 120 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 NUF2Q9BZD4 464 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 SLCO1B3Q9NPD5 702 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 LANCL2Q9NS86 450 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 ASIC5Q9NY37 505 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 EHD3Q9NZN3 535 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 C19orf25Q9UFG5 118 aaPredicted RBP11.48□□□□□ -0.57
DDX55-210ENST00000543016 C3orf18Q9UK00 162 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 PSME2Q9UL46 239 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 MKL2Q9ULH7 1088 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 EIF3LQ9Y262 564 aaKnown RBP11.48□□□□□ -0.57
DDX55-210ENST00000543016 USH1CQ9Y6N9 552 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 FER1L5A0AVI2 2057 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 ACACBO00763 2458 aa11.48□□□□□ -0.57
DDX55-210ENST00000543016 C1orf226A1L170 272 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 IDSB3KWA1 339 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 CNOT3O75175 753 aaKnown RBP11.47□□□□□ -0.57
DDX55-210ENST00000543016 B3GALT4O96024 378 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 NR2F6P10588 404 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 KITP10721 976 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 LBPP18428 481 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 F8A1P23610 371 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 RPL3P39023 403 aaKnown RBP11.47□□□□□ -0.57
DDX55-210ENST00000543016 ERVK-8P63133 956 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 RAE1P78406 368 aaKnown RBP11.47□□□□□ -0.57
DDX55-210ENST00000543016 SERTAD2Q14140 314 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 UGT8Q16880 541 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 SYT16Q17RD7 645 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 MINDY4Q4G0A6 757 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 FAM47EQ6ZV65 393 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 SPATA19Q7Z5L4 167 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 SAMD14Q8IZD0 417 aaPredicted RBP11.47□□□□□ -0.57
DDX55-210ENST00000543016 CEP70Q8NHQ1 597 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 TM4SF18Q96CE8 201 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 RNF31Q96EP0 1072 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 ZNF764Q96H86 408 aaPredicted RBP11.47□□□□□ -0.57
DDX55-210ENST00000543016 NAF1Q96HR8 494 aaKnown RBP11.47□□□□□ -0.57
DDX55-210ENST00000543016 MAELQ96JY0 434 aaKnown RBP11.47□□□□□ -0.57
DDX55-210ENST00000543016 C3orf30Q96M34 536 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 SORBS1Q9BX66 1292 aaKnown RBP11.47□□□□□ -0.57
DDX55-210ENST00000543016 TRIM55Q9BYV6 548 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 RPF2Q9H7B2 306 aaKnown RBP11.47□□□□□ -0.57
DDX55-210ENST00000543016 AKTIPQ9H8T0 292 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 MYNNQ9NPC7 610 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 PRTFDC1Q9NRG1 225 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 NOP53Q9NZM5 478 aaKnown RBP11.47□□□□□ -0.57
DDX55-210ENST00000543016 MARCOQ9UEW3 520 aaPredicted RBP11.47□□□□□ -0.57
DDX55-210ENST00000543016 IL17BQ9UHF5 180 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 FBXW2Q9UKT8 454 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 RAXQ9Y2V3 346 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 ATG4BQ9Y4P1 393 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 PCDHA9Q9Y5H5 950 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 PTGDR2Q9Y5Y4 395 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 IGF2RP11717 2491 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 SCN3AQ9NY46 2000 aa11.47□□□□□ -0.57
DDX55-210ENST00000543016 LOC102723996A0A087X1L8 192 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 ATP6AP2A0A1C7CYW4 349 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 A0A1W2PQ72 361 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 A0A1W2PR48 441 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 PEX12O00623 359 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 SDHDO14521 159 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 ZNF195O14628 629 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 B4GALT2O60909 372 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 DNAJB6O75190 326 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 PEX11AO75192 247 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 ALOX12BO75342 701 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 ATP6AP2O75787 350 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 UMODP07911 640 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 VIMP08670 466 aaKnown RBP11.46□□□□□ -0.57
DDX55-210ENST00000543016 C8orf89P0DMQ9 161 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 TROVE2P10155 538 aaKnown RBP eCLIP11.46□□□□□ -0.57
DDX55-210ENST00000543016 HNRNPH2P55795 449 aaKnown RBP11.46□□□□□ -0.57
DDX55-210ENST00000543016 TMPRSS3P57727 454 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 RPL38P63173 70 aaKnown RBP11.46□□□□□ -0.57
DDX55-210ENST00000543016 RHAGQ02094 409 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 TLE3Q04726 772 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 GALNTL6Q49A17 601 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 RFTN2Q52LD8 501 aaPredicted RBP11.46□□□□□ -0.57
DDX55-210ENST00000543016 NDUFAF5Q5TEU4 345 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 MFSD4BQ5TF39 518 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 OR52E8Q6IFG1 317 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 TMEM205Q6UW68 189 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 EPGNQ6UW88 154 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 CCDC81Q6ZN84 652 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 ACAD11Q709F0 780 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 LARP4Q71RC2 724 aaKnown RBP eCLIP11.46□□□□□ -0.57
DDX55-210ENST00000543016 VASH2Q86V25 355 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 SCUBE1Q8IWY4 988 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 TMEM132CQ8N3T6 1108 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 FNDC5Q8NAU1 212 aa11.46□□□□□ -0.57
DDX55-210ENST00000543016 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms