RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 TAS2R13Q9NYV9 303 aa6.32□□□□□ -1.4
USP28-202ENST00000535607 PLA2G3Q9NZ20 509 aa6.32□□□□□ -1.4
USP28-202ENST00000535607 PTTG3PQ9NZH4 202 aa6.32□□□□□ -1.4
USP28-202ENST00000535607 SEC14L4Q9UDX3 406 aa6.32□□□□□ -1.4
USP28-202ENST00000535607 RIMKLBQ9ULI2 386 aa6.32□□□□□ -1.4
USP28-202ENST00000535607 STUB1Q9UNE7 303 aa6.32□□□□□ -1.4
USP28-202ENST00000535607 ZFR2Q9UPR6 939 aaKnown RBP6.32□□□□□ -1.4
USP28-202ENST00000535607 PCDHB1Q9Y5F3 818 aa6.32□□□□□ -1.4
USP28-202ENST00000535607 ACTL7AQ9Y615 435 aa6.32□□□□□ -1.4
USP28-202ENST00000535607 COMMD10Q9Y6G5 202 aa6.32□□□□□ -1.4
USP28-202ENST00000535607 EVPLQ92817 2033 aa6.32□□□□□ -1.4
USP28-202ENST00000535607 ADAMTS20P59510 1910 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 SYNJ2BP-COX16A0A087WUM0 186 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 MEIOCA2RUB1 952 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 A8MU76 341 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 NT5C1B-RDH14C9J2C7 533 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 DFFAO00273 331 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 MUSKO15146 869 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 HOXA3O43365 443 aaPredicted RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 XPNPEP2O43895 674 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 SEC22BO75396 215 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 VPS26AO75436 327 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 CREG1O75629 220 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 UBXN7O94888 489 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 EPN2O95208 641 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 MT-ND1P03886 318 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 FTH1P19P0C7X4 201 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 CKBP12277 381 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 CD1DP15813 335 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 ARF4P18085 180 aaPredicted RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 GTF2E2P29084 291 aaKnown RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 ALDH4A1P30038 563 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 FMO3P31513 532 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 ADRA1AP35348 466 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 THPOP40225 353 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 MAGEA11P43364 429 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 MAP2K4P45985 399 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 SLC6A9P48067 706 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 NRIP1P48552 1158 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 SCNN1GP51170 649 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 RORCP51449 518 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 SUOXP51687 545 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 ATXN1P54253 815 aaKnown RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 CTXN1P60606 82 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 RAP2BP61225 183 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 UFM1P61960 85 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 IL1RL1Q01638 556 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 ADIGQ0VDE8 80 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 EIF2B5Q13144 721 aaKnown RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 BAMBIQ13145 260 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 ASAH1Q13510 395 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 RAPSNQ13702 412 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 ELAVL1Q15717 326 aaKnown RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 CARTPTQ16568 116 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 TRIM60Q495X7 471 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 KLHL12Q53G59 568 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 XKR7Q5GH72 579 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 PAGE3Q5JUK9 113 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 FBXO47Q5MNV8 452 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 C6orf136Q5SQH8 315 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 PDZK1Q5T2W1 519 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 AFMIDQ63HM1 303 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 OR2T5Q6IEZ7 315 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 CES5AQ6NT32 575 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 SLC39A5Q6ZMH5 540 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 TMPRSS11AQ6ZMR5 421 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 ZNF782Q6ZMW2 699 aaPredicted RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 RNF165Q6ZSG1 346 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 MSANTD1Q6ZTZ1 278 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 SLC46A3Q7Z3Q1 461 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 UBE2Q1Q7Z7E8 422 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 CCDC190Q86UF4 302 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 RALGPS2Q86X27 583 aaPredicted RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 SNX29P2Q8IUI4 249 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 ZDHHC21Q8IVQ6 265 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 GPR135Q8IZ08 494 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 GDPD1Q8N9F7 314 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 Q8N9G6 341 aaPredicted RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 ATG16L2Q8NAA4 619 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 DENND6BQ8NEG7 585 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 NLGN4YQ8NFZ3 816 aaPredicted RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 OR2T29Q8NH02 315 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 CNIH3Q8TBE1 160 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 ENKURQ8TC29 256 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 FAM110BQ8TC76 370 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 BRIX1Q8TDN6 353 aaKnown RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 SLC13A3Q8WWT9 602 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 EXT2Q93063 718 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 MOCOSQ96EN8 888 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 PPM1MQ96MI6 270 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 ZNF382Q96SR6 550 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 PITX2Q99697 317 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 MRPL45Q9BRJ2 306 aaKnown RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 MED10Q9BTT4 135 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 ACAT2Q9BWD1 397 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 C11orf54Q9H0W9 315 aaPredicted RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 SLC25A51Q9H1U9 297 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 NXF3Q9H4D5 531 aaKnown RBP6.31□□□□□ -1.4
USP28-202ENST00000535607 MINDY3Q9H8M7 445 aa6.31□□□□□ -1.4
USP28-202ENST00000535607 ZNF556Q9HAH1 456 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms